Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPOKI128_RS05940 | Genome accession | NZ_CP006822 |
| Coordinates | 1244986..1245099 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217868.1 | Uniprot ID | A0AAE7DTV1 |
| Organism | Helicobacter pylori oki128 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1239986..1250099
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI128_RS05915 (HPOKI128_06120) | - | 1240046..1242268 (+) | 2223 | WP_025288487.1 | AAA family ATPase | - |
| HPOKI128_RS05920 (HPOKI128_06125) | panD | 1242258..1242608 (+) | 351 | WP_025288488.1 | aspartate 1-decarboxylase | - |
| HPOKI128_RS05925 (HPOKI128_06130) | - | 1242619..1242912 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPOKI128_RS05930 (HPOKI128_06135) | - | 1242912..1243907 (+) | 996 | WP_025288489.1 | PDZ domain-containing protein | - |
| HPOKI128_RS05935 (HPOKI128_06140) | comB6 | 1243915..1244970 (+) | 1056 | WP_025223380.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPOKI128_RS05940 (HPOKI128_06145) | comB7 | 1244986..1245099 (+) | 114 | WP_001217868.1 | hypothetical protein | Machinery gene |
| HPOKI128_RS05945 (HPOKI128_06150) | comB8 | 1245096..1245839 (+) | 744 | WP_025223379.1 | type IV secretion system protein | Machinery gene |
| HPOKI128_RS05950 (HPOKI128_06155) | comB9 | 1245839..1246801 (+) | 963 | WP_025223378.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPOKI128_RS05955 (HPOKI128_06160) | comB10 | 1246794..1247930 (+) | 1137 | WP_025223377.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPOKI128_RS05960 (HPOKI128_06165) | - | 1248000..1249412 (+) | 1413 | WP_025288490.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4323.29 Da Isoelectric Point: 9.3572
>NTDB_id=114168 HPOKI128_RS05940 WP_001217868.1 1244986..1245099(+) (comB7) [Helicobacter pylori oki128]
MRIFFVIMGIMLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGIMLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=114168 HPOKI128_RS05940 WP_001217868.1 1244986..1245099(+) (comB7) [Helicobacter pylori oki128]
ATGAGAATTTTTTTTGTCATTATGGGAATCATGTTATTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTGAATCTCGCATGA
ATGAGAATTTTTTTTGTCATTATGGGAATCATGTTATTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTGAATCTCGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
91.892 |
100 |
0.919 |