Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQN58_RS03495 Genome accession   NZ_LS483443
Coordinates   677767..678243 (+) Length   158 a.a.
NCBI ID   WP_032997746.1    Uniprot ID   -
Organism   Aggregatibacter segnis ATCC 33393 strain NCTC 10977     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 672767..683243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN58_RS03485 (NCTC10977_00700) pssA 673263..674630 (+) 1368 WP_005715874.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  DQN58_RS03490 (NCTC10977_00701) uvrA 674765..677596 (-) 2832 WP_005715877.1 excinuclease ABC subunit UvrA -
  DQN58_RS03495 (NCTC10977_00702) ssb 677767..678243 (+) 477 WP_032997746.1 single-stranded DNA-binding protein Machinery gene
  DQN58_RS03500 (NCTC10977_00703) - 678636..679043 (+) 408 WP_005715880.1 hypothetical protein -
  DQN58_RS03505 (NCTC10977_00704) - 679056..679499 (+) 444 WP_032997747.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQN58_RS03510 (NCTC10977_00705) - 680180..680551 (-) 372 WP_005715885.1 hypothetical protein -
  DQN58_RS03520 (NCTC10977_00706) - 680859..681437 (+) 579 WP_005715886.1 NAD(P)H-dependent oxidoreductase -
  DQN58_RS03525 (NCTC10977_00707) - 681536..682402 (-) 867 WP_005715888.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17616.48 Da        Isoelectric Point: 5.3193

>NTDB_id=1141690 DQN58_RS03495 WP_032997746.1 677767..678243(+) (ssb) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQERYTTEIQGDVLQMLDSRSDRQSGGYAPAAQPTYPSQAPSAPRSTPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1141690 DQN58_RS03495 WP_032997746.1 677767..678243(+) (ssb) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
ATGGCAGGAGTAAATAAAGTCATTATTGTTGGTAACTTAGGTAACGATCCTGAAATTCGCACCATGCCGAACGGCGAGGC
GGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGATAAAAACACCGGTGAACGTCGTGAAGTGACCGAATGGC
ACCGCATTGTGTTCTATCGTCGTCAGGCGGAAGTGGCAGGCGAATACCTGCGCAAAGGCTCTAAAGTCTATGTTGAAGGA
CGTTTAAAAACCCGTAAATGGCAAGATCAAAACGGCCAAGAACGCTACACCACAGAAATTCAAGGCGACGTTTTACAAAT
GTTAGACAGCCGCTCTGATCGTCAATCCGGCGGCTATGCCCCAGCTGCTCAACCGACTTATCCAAGCCAAGCACCAAGTG
CGCCACGTTCCACCCCGGCAAGTAAACCGGCAGCCGAAGCACCGATGGATAACTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.945

100

0.81
  ssb Vibrio cholerae strain A1552

54.598

100

0.601
  ssb Neisseria meningitidis MC58

48.864

100

0.544
  ssb Neisseria gonorrhoeae MS11

48.864

100

0.544

Multiple sequence alignment