Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQN35_RS01805 | Genome accession | NZ_LS483442 |
| Coordinates | 328273..328764 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC8370 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 323273..333764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN35_RS01775 (NCTC8370_00353) | - | 324563..325063 (+) | 501 | WP_015055998.1 | phosphatase PAP2 family protein | - |
| DQN35_RS01780 (NCTC8370_00354) | trxA | 325126..325458 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| DQN35_RS01785 (NCTC8370_00355) | - | 325510..326097 (-) | 588 | WP_010922631.1 | helix-turn-helix domain-containing protein | - |
| DQN35_RS01790 (NCTC8370_00356) | mutY | 326173..327327 (-) | 1155 | WP_015055997.1 | A/G-specific adenine glycosylase | - |
| DQN35_RS01795 (NCTC8370_00357) | - | 327495..327788 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| DQN35_RS01800 (NCTC8370_00358) | rpsF | 327961..328251 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQN35_RS01805 (NCTC8370_00359) | ssb | 328273..328764 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQN35_RS01810 (NCTC8370_00360) | rpsR | 328929..329168 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQN35_RS01815 (NCTC8370_00361) | - | 329301..329957 (-) | 657 | WP_010922629.1 | DUF1129 domain-containing protein | - |
| DQN35_RS01820 (NCTC8370_00362) | - | 330090..331034 (-) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1141643 DQN35_RS01805 WP_002983122.1 328273..328764(+) (ssb) [Streptococcus pyogenes strain NCTC8370]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1141643 DQN35_RS01805 WP_002983122.1 328273..328764(+) (ssb) [Streptococcus pyogenes strain NCTC8370]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |