Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQN29_RS08230 Genome accession   NZ_LS483437
Coordinates   1562426..1562917 (-) Length   163 a.a.
NCBI ID   WP_023605268.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13751     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1557426..1567917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN29_RS08215 (NCTC13751_01647) - 1560157..1561101 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  DQN29_RS08220 (NCTC13751_01648) - 1561234..1561890 (+) 657 WP_010922629.1 DUF1129 domain-containing protein -
  DQN29_RS08225 (NCTC13751_01649) rpsR 1562023..1562262 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQN29_RS08230 (NCTC13751_01650) ssb 1562426..1562917 (-) 492 WP_023605268.1 single-stranded DNA-binding protein Machinery gene
  DQN29_RS08235 (NCTC13751_01651) rpsF 1562939..1563229 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  DQN29_RS08240 (NCTC13751_01652) - 1563402..1563695 (-) 294 WP_002983113.1 hypothetical protein -
  DQN29_RS08245 (NCTC13751_01653) mutY 1563863..1565017 (+) 1155 WP_002988276.1 A/G-specific adenine glycosylase -
  DQN29_RS08250 (NCTC13751_01654) - 1565194..1565781 (+) 588 WP_076639280.1 helix-turn-helix domain-containing protein -
  DQN29_RS08255 (NCTC13751_01655) trxA 1565833..1566165 (-) 333 WP_001932060.1 thioredoxin -
  DQN29_RS08260 (NCTC13751_01656) - 1566228..1566728 (-) 501 WP_161230218.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17993.81 Da        Isoelectric Point: 4.8894

>NTDB_id=1141527 DQN29_RS08230 WP_023605268.1 1562426..1562917(-) (ssb) [Streptococcus pyogenes strain NCTC13751]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNISSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1141527 DQN29_RS08230 WP_023605268.1 1562426..1562917(-) (ssb) [Streptococcus pyogenes strain NCTC13751]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACGCTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACATTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment