Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DQO04_RS07235 Genome accession   NZ_LS483433
Coordinates   1578990..1581245 (+) Length   751 a.a.
NCBI ID   WP_111769976.1    Uniprot ID   -
Organism   Pseudomonas mucidolens strain NCTC8068     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1573990..1586245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO04_RS07220 (NCTC8068_01435) - 1574385..1575374 (-) 990 WP_090221500.1 2-hydroxyacid dehydrogenase -
  DQO04_RS07225 (NCTC8068_01436) - 1575398..1578157 (-) 2760 WP_084381249.1 ATP-binding protein -
  DQO04_RS07230 (NCTC8068_01437) - 1578339..1578854 (-) 516 WP_084381248.1 DUF2062 domain-containing protein -
  DQO04_RS07235 (NCTC8068_01438) comA 1578990..1581245 (+) 2256 WP_111769976.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQO04_RS07240 (NCTC8068_01439) exbB 1581321..1581956 (+) 636 WP_165447450.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DQO04_RS07245 (NCTC8068_01440) - 1581953..1582381 (+) 429 WP_084381247.1 biopolymer transporter ExbD -
  DQO04_RS07250 (NCTC8068_01441) lpxK 1582381..1583391 (+) 1011 WP_084381246.1 tetraacyldisaccharide 4'-kinase -
  DQO04_RS07255 (NCTC8068_01442) - 1583416..1583601 (+) 186 WP_003174668.1 Trm112 family protein -
  DQO04_RS07260 (NCTC8068_01443) kdsB 1583598..1584362 (+) 765 WP_084381245.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DQO04_RS07265 (NCTC8068_01444) - 1584362..1584826 (+) 465 WP_084381244.1 low molecular weight protein-tyrosine-phosphatase -
  DQO04_RS07270 (NCTC8068_01445) murB 1584823..1585842 (+) 1020 WP_084381243.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81780.97 Da        Isoelectric Point: 11.0056

>NTDB_id=1141362 DQO04_RS07235 WP_111769976.1 1578990..1581245(+) (comA) [Pseudomonas mucidolens strain NCTC8068]
MRTGMFALALGLLALRFLPALPSVGWLLVLPVVALMMLPFRTYPLAFFLLGLGWACLSAQWALDDRLASELDGQTRWVEG
RVTGLTQHTEGVVRFELSDGRSRKAKLPKRIRLTWHGGPPVQGGERWRLAVTLKRPSGLLNFHGFDQQAWLLTRRVGATG
SVKDGQRLAPARHAWRDSIRQQLLAVDAQGREAGLAALVLGDGSGLLREDWRILQDTGTVHLLVISGQHIGLLSGLIYAL
VAGLARYGAWPRRIPWLPWACGLAFAAALAYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLVMEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWRVWHAWTRAQWLIAIGLFPLILVLGLPVSLSAPLANLFAVPWISVVVLPLAV
LGTLLLAVPVLGSGLLWLAGGALNGLFTALGVLAGQLPAWIPAEMPFGFWLLSLIGALLLLMPTGIPFRLLGWPLLLLAV
FVPGEDIPRGQVEVVQLDVGQGLAIVLRTRHHTLLYDAGPRLGDFDLGARVVLPSLRKWGVTQLDLMVLSHADADHAGGA
AAVARGLPVKRVVGGETVGLALFLQAQPCASGEQWEWDGVTFQLWQWSDAVSGNQKSCVLQVQASGKRLLLTGDIDHQAE
RALLSTPLAVGTDWLQAPHHGSRSSSSWPFLQRLAPAAVLISRGHGNGFGHPHPRVLERYHQVGSAIYDSAEQGAVRFRL
GTDDPPVTARSQRRFWRPPVIGRYQKQQPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=1141362 DQO04_RS07235 WP_111769976.1 1578990..1581245(+) (comA) [Pseudomonas mucidolens strain NCTC8068]
ATGCGCACAGGGATGTTCGCGCTCGCACTGGGATTGCTTGCCTTGCGTTTCCTGCCGGCGTTGCCGTCGGTCGGTTGGCT
GCTGGTCCTACCGGTCGTCGCGTTGATGATGCTACCGTTTCGTACGTATCCGTTGGCTTTTTTCTTACTCGGCTTGGGTT
GGGCCTGCCTCAGCGCCCAGTGGGCACTGGATGATCGGCTCGCGTCGGAGCTGGATGGTCAGACACGGTGGGTGGAAGGG
CGGGTCACGGGGCTGACCCAGCACACAGAGGGCGTGGTGCGTTTCGAGCTGAGCGACGGCCGCTCGCGCAAAGCCAAACT
GCCCAAGCGCATTCGTCTGACCTGGCATGGCGGGCCGCCGGTGCAGGGTGGCGAGCGCTGGCGCTTGGCCGTCACCCTCA
AGCGGCCGTCCGGGTTGCTCAATTTTCACGGATTTGACCAGCAGGCCTGGTTATTGACCCGGCGTGTGGGGGCGACCGGA
TCGGTCAAGGACGGCCAGCGTCTGGCGCCTGCCCGGCACGCCTGGCGAGATTCGATCCGCCAGCAGCTATTAGCGGTGGA
CGCTCAAGGCCGGGAAGCCGGGCTGGCGGCGCTGGTGCTGGGCGATGGTTCCGGTTTGCTGCGCGAGGACTGGCGTATTT
TGCAGGACACCGGCACTGTGCATTTATTGGTGATTTCGGGTCAGCACATCGGCCTGTTGTCCGGGTTGATCTATGCCCTG
GTCGCTGGTTTGGCCCGCTACGGGGCGTGGCCCAGGCGCATCCCCTGGCTGCCTTGGGCCTGTGGGCTGGCCTTTGCCGC
CGCGCTGGCTTATGGCCTGTTGGCGGGTTTTGAAGTGCCGGTGCAGCGGGCTTGCGTGATGGTCGGGCTGGTGTTGCTGT
GGCGCCTGCGATTTCGGCACCTGGGCATCTGGTGGCCACTGTTGCTGGCGCTGAATGCCGTGTTGGTCATGGAGCCATTG
GCCAGTCTGCAGCCGGGGTTCTGGCTGTCATTCGCCGCGGTGGCCGTGTTGGTGCTGGCGTTCAGCGGGCGTCTGGGGCC
CTGGCGTGTATGGCACGCCTGGACCCGCGCCCAGTGGCTGATCGCGATTGGTTTGTTTCCACTGATCCTGGTGCTCGGCC
TGCCGGTCAGCCTGAGCGCCCCTTTGGCTAACCTGTTTGCCGTACCCTGGATCAGCGTGGTGGTGTTGCCGCTGGCAGTG
CTCGGAACACTGTTGTTGGCGGTCCCGGTGCTGGGAAGTGGTTTGCTGTGGTTGGCGGGCGGCGCGCTGAACGGGTTGTT
CACGGCATTGGGCGTGCTTGCGGGGCAACTACCCGCCTGGATCCCGGCCGAGATGCCCTTCGGATTCTGGTTGTTGAGCT
TGATCGGAGCCCTGCTGTTATTGATGCCCACCGGCATTCCTTTTCGTCTGTTGGGATGGCCCTTGCTGCTGTTGGCGGTG
TTTGTGCCCGGTGAAGACATTCCCCGTGGACAGGTCGAGGTGGTGCAACTGGATGTTGGCCAGGGGCTGGCAATCGTGCT
GCGTACCCGCCACCACACCTTGCTGTATGACGCCGGGCCGCGCCTTGGCGATTTCGATCTCGGCGCGCGGGTGGTGCTGC
CGTCGTTGCGCAAATGGGGCGTTACACAGTTGGATTTGATGGTGCTCAGTCATGCCGACGCCGATCACGCGGGCGGCGCA
GCGGCCGTCGCCCGCGGGCTGCCGGTCAAGCGGGTGGTGGGCGGGGAGACCGTGGGGCTTGCGCTGTTTTTGCAGGCACA
ACCGTGTGCCAGCGGTGAGCAATGGGAATGGGACGGCGTGACGTTTCAGCTGTGGCAATGGTCGGATGCCGTTAGCGGTA
ACCAGAAGTCCTGTGTCTTGCAGGTACAAGCCAGTGGCAAGCGGTTGCTGCTGACTGGCGATATCGATCACCAGGCCGAG
CGGGCATTGCTGTCCACGCCCCTGGCCGTCGGCACCGATTGGTTACAAGCGCCTCATCATGGCAGCCGCAGCTCCTCCTC
GTGGCCGTTTCTGCAACGGCTGGCCCCCGCGGCGGTGCTGATTTCCCGTGGGCATGGCAACGGTTTCGGTCATCCCCACC
CGCGAGTGCTGGAACGTTATCATCAGGTGGGCAGCGCCATTTATGACAGCGCCGAGCAGGGCGCCGTGCGCTTTCGCCTG
GGCACCGACGATCCGCCGGTCACGGCGCGTAGCCAGCGTCGTTTCTGGCGTCCACCGGTCATTGGGCGTTACCAAAAACA
GCAGCCTGCAACATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.306

95.606

0.577
  comA Ralstonia pseudosolanacearum GMI1000

35.467

100

0.369

Multiple sequence alignment