Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DQO04_RS07240 Genome accession   NZ_LS483433
Coordinates   1581321..1581956 (+) Length   211 a.a.
NCBI ID   WP_165447450.1    Uniprot ID   -
Organism   Pseudomonas mucidolens strain NCTC8068     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576321..1586956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO04_RS07230 (NCTC8068_01437) - 1578339..1578854 (-) 516 WP_084381248.1 DUF2062 domain-containing protein -
  DQO04_RS07235 (NCTC8068_01438) comA 1578990..1581245 (+) 2256 WP_111769976.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQO04_RS07240 (NCTC8068_01439) exbB 1581321..1581956 (+) 636 WP_165447450.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DQO04_RS07245 (NCTC8068_01440) - 1581953..1582381 (+) 429 WP_084381247.1 biopolymer transporter ExbD -
  DQO04_RS07250 (NCTC8068_01441) lpxK 1582381..1583391 (+) 1011 WP_084381246.1 tetraacyldisaccharide 4'-kinase -
  DQO04_RS07255 (NCTC8068_01442) - 1583416..1583601 (+) 186 WP_003174668.1 Trm112 family protein -
  DQO04_RS07260 (NCTC8068_01443) kdsB 1583598..1584362 (+) 765 WP_084381245.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DQO04_RS07265 (NCTC8068_01444) - 1584362..1584826 (+) 465 WP_084381244.1 low molecular weight protein-tyrosine-phosphatase -
  DQO04_RS07270 (NCTC8068_01445) murB 1584823..1585842 (+) 1020 WP_084381243.1 UDP-N-acetylmuramate dehydrogenase -
  DQO04_RS07275 (NCTC8068_01446) - 1586068..1586538 (+) 471 WP_084381242.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.04 Da        Isoelectric Point: 6.8772

>NTDB_id=1141363 DQO04_RS07240 WP_165447450.1 1581321..1581956(+) (exbB) [Pseudomonas mucidolens strain NCTC8068]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFTGSGMTTNAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1141363 DQO04_RS07240 WP_165447450.1 1581321..1581956(+) (exbB) [Pseudomonas mucidolens strain NCTC8068]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACGCCGGACCACCTGCTGGGACAGGTCTGGCGCTGGATCAAGGACA
AACAGCTGGACAAGGAAAAACTCAAGGAACTACGGGCCAATTCCCCCCTGGGCGAAATCCTGGCCGCCGGGCTTGCCAAT
TCCAAGCACGGTCGCGAGATCATGAAAGAATGCATCGAGGAAGCGGCCGCCCGAGTCATTCATGAGCTGGAACGCTATAT
CAATGCCTTGGGCACCATCGCCGCGATGGCACCGTTGCTCGGCTTGCTTGGCACCGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCACGGGCTCAGGCATGACCACCAACGCCGCGGTGTTGGCCGGTGGTATTTCCAAAGCCTTGGTCACCACGGCG
GCAGGCCTGATGGTGGGTATCCCGGCAGTGTTTTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTAGAGGTGGTGCAAGGCGACCGCGATGTCGATCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment