Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DQN52_RS02150 Genome accession   NZ_LS483426
Coordinates   391521..391829 (-) Length   102 a.a.
NCBI ID   WP_003788664.1    Uniprot ID   A0AAX2J377
Organism   Kingella kingae strain NCTC10529     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386521..396829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS02125 (NCTC10529_00415) uvrC 387029..388861 (-) 1833 WP_032827844.1 excinuclease ABC subunit UvrC -
  DQN52_RS02130 (NCTC10529_00416) - 388897..389259 (-) 363 WP_331250423.1 HAD domain-containing protein -
  DQN52_RS11290 - 389208..389423 (-) 216 WP_071461627.1 FAD-dependent monooxygenase -
  DQN52_RS11295 (NCTC10529_00417) - 389408..389581 (-) 174 WP_230466983.1 hypothetical protein -
  DQN52_RS02140 (NCTC10529_00418) tsf 389634..390488 (-) 855 WP_003788661.1 translation elongation factor Ts -
  DQN52_RS02145 (NCTC10529_00419) rpsB 390573..391298 (-) 726 WP_003788662.1 30S ribosomal protein S2 -
  DQN52_RS02150 (NCTC10529_00420) comE 391521..391829 (-) 309 WP_003788664.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10803.69 Da        Isoelectric Point: 10.6245

>NTDB_id=1141177 DQN52_RS02150 WP_003788664.1 391521..391829(-) (comE) [Kingella kingae strain NCTC10529]
MLKKIVLSIISLGVTTLSFAQLNINTATADELDKQLNGIGPAKAKAIVEYREKNGAFKSVDDLASVPGIKMATVNKLREQ
ATVGNVAAKPVTTKAQPITKPK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1141177 DQN52_RS02150 WP_003788664.1 391521..391829(-) (comE) [Kingella kingae strain NCTC10529]
ATGTTAAAGAAAATAGTGTTGTCTATTATTTCATTAGGTGTTACCACACTAAGTTTTGCCCAATTAAATATTAATACTGC
AACGGCTGATGAATTGGATAAGCAACTCAATGGTATTGGTCCTGCCAAGGCAAAGGCGATTGTTGAATACCGTGAAAAAA
ATGGTGCATTCAAATCGGTTGATGATTTAGCTTCTGTGCCAGGTATTAAAATGGCTACGGTGAATAAGTTGCGTGAACAA
GCAACTGTGGGAAATGTTGCGGCAAAACCTGTTACAACTAAAGCACAACCCATTACGAAGCCTAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.561

80.392

0.382

Multiple sequence alignment