Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQN80_RS02650 Genome accession   NZ_LS483422
Coordinates   618111..618641 (+) Length   176 a.a.
NCBI ID   WP_068437579.1    Uniprot ID   A0A1B7JRY3
Organism   Providencia heimbachae strain NCTC12003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 613111..623641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN80_RS02640 (NCTC12003_00541) - 613614..614807 (+) 1194 WP_068437574.1 amino acid aminotransferase -
  DQN80_RS02645 (NCTC12003_00542) uvrA 614878..617712 (-) 2835 WP_068437577.1 excinuclease ABC subunit UvrA -
  DQN80_RS02650 (NCTC12003_00543) ssb 618111..618641 (+) 531 WP_068437579.1 single-stranded DNA-binding protein Machinery gene
  DQN80_RS02655 (NCTC12003_00544) - 619667..619951 (+) 285 WP_068909273.1 helix-turn-helix domain-containing protein -
  DQN80_RS02660 (NCTC12003_00545) - 620167..620718 (+) 552 WP_068437586.1 fimbrial protein -
  DQN80_RS02665 (NCTC12003_00546) - 620782..621360 (+) 579 WP_068437589.1 fimbrial protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18832.82 Da        Isoelectric Point: 4.9468

>NTDB_id=1141084 DQN80_RS02650 WP_068437579.1 618111..618641(+) (ssb) [Providencia heimbachae strain NCTC12003]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTNEMREKTEWHRVAIFGKLAEIAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGGQGGWGQPQQPQAAAQQFSGGGAPARSQAPAPA
TQSNEPPIDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1141084 DQN80_RS02650 WP_068437579.1 618111..618641(+) (ssb) [Providencia heimbachae strain NCTC12003]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCCGAAATCCGTTATATGCCTAACGG
CGGCGCGGTGGCTAACCTGACTCTGGCAACTTCTGAAAGTTGGCGCGATAAGCAAACGAATGAAATGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTATTTTTGGCAAATTAGCTGAAATCGCGGGTGAATACCTGAAAAAAGGCTCGCAAGTTTACATT
GAAGGTTCTTTGCAGACACGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTATACAACAGAAGTTGTAGTTAACATTGG
CGGTTCAATGCAAATGCTTGGTGGCCGTGGCGGTGATGCACCTTCACAAGGTCAAGGTGGTGGTCAAGGCGGTTGGGGAC
AACCTCAGCAACCTCAAGCTGCAGCTCAGCAATTCAGTGGCGGTGGCGCACCAGCTCGCTCACAAGCACCTGCACCAGCG
ACACAATCTAATGAACCACCAATCGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B7JRY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.231

100

0.716
  ssb Glaesserella parasuis strain SC1401

56.15

100

0.597
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.483
  ssb Neisseria meningitidis MC58

46.961

100

0.483

Multiple sequence alignment