Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQN54_RS09180 Genome accession   NZ_LS483417
Coordinates   1727747..1729243 (-) Length   498 a.a.
NCBI ID   WP_000759905.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722747..1734243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS09160 - 1723380..1724189 (-) 810 Protein_1735 ABC transporter substrate-binding protein -
  DQN54_RS09165 (NCTC11902_01760) amiF 1724808..1725734 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  DQN54_RS09170 (NCTC11902_01761) amiE 1725745..1726812 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  DQN54_RS09175 (NCTC11902_01762) amiD 1726821..1727747 (-) 927 WP_111690892.1 oligopeptide ABC transporter permease OppC Regulator
  DQN54_RS09180 (NCTC11902_01763) amiC 1727747..1729243 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  DQN54_RS09185 (NCTC11902_01764) amiA3 1729310..1731289 (-) 1980 WP_000742236.1 peptide ABC transporter substrate-binding protein Regulator
  DQN54_RS09195 (NCTC11902_01765) - 1731976..1733169 (-) 1194 WP_000835622.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55681.25 Da        Isoelectric Point: 9.4436

>NTDB_id=1140891 DQN54_RS09180 WP_000759905.1 1727747..1729243(-) (amiC) [Streptococcus pneumoniae strain NCTC11902]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAITGLIGLVLAYALAVPLGSAMARFKNTWIDSLSTGT
LTFLLALPTIALVYIVRLIGSSIALPDSFPILGAGDWRSYVLPAVILGLLGAPVTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1140891 DQN54_RS09180 WP_000759905.1 1727747..1729243(-) (amiC) [Streptococcus pneumoniae strain NCTC11902]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAAGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTCTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATCCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTTGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGAACTAAACATAAATATCTCTTGTACTTTAACAG
TCAGTTCCCATTTGTTCATCAAAACTTTGTGAACTTGAATTTAGGTGACTCTTACCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTACTGGTTTGATTGGTTTGGTTCTTG
CCTATGCTCTTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCCTCTCAACAGGGACT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTTCGATTGATTGGATCATCTATTGCCCTTCCAGA
TTCATTCCCTATCTTGGGAGCTGGAGATTGGCGTTCTTACGTTTTACCAGCAGTCATCCTTGGTTTGTTGGGTGCTCCTG
TTACAGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCATTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACGTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment