Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQN54_RS09165 Genome accession   NZ_LS483417
Coordinates   1724808..1725734 (-) Length   308 a.a.
NCBI ID   WP_001291294.1    Uniprot ID   A0A0B7KZ00
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719808..1730734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS09145 (NCTC11902_01754) treR 1720932..1721642 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  DQN54_RS09150 (NCTC11902_01755) - 1721675..1722478 (-) 804 WP_000157672.1 ABC transporter ATP-binding protein -
  DQN54_RS09155 - 1722491..1723368 (-) 878 Protein_1734 ABC transporter permease -
  DQN54_RS09160 - 1723380..1724189 (-) 810 Protein_1735 ABC transporter substrate-binding protein -
  DQN54_RS09165 (NCTC11902_01760) amiF 1724808..1725734 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  DQN54_RS09170 (NCTC11902_01761) amiE 1725745..1726812 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  DQN54_RS09175 (NCTC11902_01762) amiD 1726821..1727747 (-) 927 WP_111690892.1 oligopeptide ABC transporter permease OppC Regulator
  DQN54_RS09180 (NCTC11902_01763) amiC 1727747..1729243 (-) 1497 WP_000759905.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34826.88 Da        Isoelectric Point: 6.6224

>NTDB_id=1140888 DQN54_RS09165 WP_001291294.1 1724808..1725734(-) (amiF) [Streptococcus pneumoniae strain NCTC11902]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQTELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1140888 DQN54_RS09165 WP_001291294.1 1724808..1725734(-) (amiF) [Streptococcus pneumoniae strain NCTC11902]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCGTCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAACCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7KZ00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844

Multiple sequence alignment