Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQN54_RS09145 Genome accession   NZ_LS483417
Coordinates   1720932..1721642 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715932..1726642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS09125 (NCTC11902_01751) - 1716587..1716835 (-) 249 WP_000364990.1 YneF family protein -
  DQN54_RS09130 (NCTC11902_01752) treC 1716977..1718602 (-) 1626 WP_000171211.1 alpha,alpha-phosphotrehalase -
  DQN54_RS09140 (NCTC11902_01753) treP 1718780..1720747 (-) 1968 WP_000514303.1 PTS system trehalose-specific EIIBC component -
  DQN54_RS09145 (NCTC11902_01754) treR 1720932..1721642 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  DQN54_RS09150 (NCTC11902_01755) - 1721675..1722478 (-) 804 WP_000157672.1 ABC transporter ATP-binding protein -
  DQN54_RS09155 - 1722491..1723368 (-) 878 Protein_1734 ABC transporter permease -
  DQN54_RS09160 - 1723380..1724189 (-) 810 Protein_1735 ABC transporter substrate-binding protein -
  DQN54_RS09165 (NCTC11902_01760) amiF 1724808..1725734 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=1140887 DQN54_RS09145 WP_000760673.1 1720932..1721642(+) (treR) [Streptococcus pneumoniae strain NCTC11902]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1140887 DQN54_RS09145 WP_000760673.1 1720932..1721642(+) (treR) [Streptococcus pneumoniae strain NCTC11902]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment