Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQN54_RS09175 Genome accession   NZ_LS483417
Coordinates   1726821..1727747 (-) Length   308 a.a.
NCBI ID   WP_111690892.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721821..1732747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS09155 - 1722491..1723368 (-) 878 Protein_1734 ABC transporter permease -
  DQN54_RS09160 - 1723380..1724189 (-) 810 Protein_1735 ABC transporter substrate-binding protein -
  DQN54_RS09165 (NCTC11902_01760) amiF 1724808..1725734 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  DQN54_RS09170 (NCTC11902_01761) amiE 1725745..1726812 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  DQN54_RS09175 (NCTC11902_01762) amiD 1726821..1727747 (-) 927 WP_111690892.1 oligopeptide ABC transporter permease OppC Regulator
  DQN54_RS09180 (NCTC11902_01763) amiC 1727747..1729243 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  DQN54_RS09185 (NCTC11902_01764) amiA3 1729310..1731289 (-) 1980 WP_000742236.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34692.80 Da        Isoelectric Point: 9.6667

>NTDB_id=1140890 DQN54_RS09175 WP_111690892.1 1726821..1727747(-) (amiD) [Streptococcus pneumoniae strain NCTC11902]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLEDASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1140890 DQN54_RS09175 WP_111690892.1 1726821..1727747(-) (amiD) [Streptococcus pneumoniae strain NCTC11902]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGAGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

80.844

100

0.808
  amiD Streptococcus thermophilus LMD-9

80.844

100

0.808

Multiple sequence alignment