Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQN40_RS09785 | Genome accession | NZ_LS483413 |
| Coordinates | 1930363..1930854 (-) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1925363..1935854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN40_RS09770 (NCTC7136_02024) | - | 1928096..1929040 (+) | 945 | WP_011888617.1 | magnesium transporter CorA family protein | - |
| DQN40_RS09775 (NCTC7136_02025) | - | 1929172..1929828 (+) | 657 | WP_003059462.1 | DUF1129 domain-containing protein | - |
| DQN40_RS09780 (NCTC7136_02026) | rpsR | 1929959..1930198 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQN40_RS09785 (NCTC7136_02027) | ssb | 1930363..1930854 (-) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQN40_RS09790 (NCTC7136_02028) | rpsF | 1930876..1931166 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQN40_RS09795 (NCTC7136_02029) | - | 1932125..1932418 (-) | 294 | WP_015058032.1 | hypothetical protein | - |
| DQN40_RS09800 (NCTC7136_02030) | mutY | 1932584..1933750 (+) | 1167 | WP_084916729.1 | A/G-specific adenine glycosylase | - |
| DQN40_RS09805 (NCTC7136_02031) | trxA | 1933801..1934115 (-) | 315 | WP_003052691.1 | thioredoxin | - |
| DQN40_RS09810 (NCTC7136_02032) | - | 1934342..1935661 (+) | 1320 | WP_111679421.1 | FAD-containing oxidoreductase | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1140722 DQN40_RS09785 WP_002983122.1 1930363..1930854(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1140722 DQN40_RS09785 WP_002983122.1 1930363..1930854(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |