Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQN67_RS01860 Genome accession   NZ_LS483410
Coordinates   403831..404310 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila strain NCTC11404     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 398831..409310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN67_RS01820 (NCTC11404_00352) rplO 398963..399397 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  DQN67_RS01825 (NCTC11404_00353) secY 399400..400728 (+) 1329 WP_027224266.1 preprotein translocase subunit SecY -
  DQN67_RS01830 rpmJ 400745..400858 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  DQN67_RS01835 (NCTC11404_00354) rpsM 400936..401292 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  DQN67_RS01840 (NCTC11404_00355) rpsK 401316..401714 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  DQN67_RS01845 (NCTC11404_00356) rpsD 401731..402351 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  DQN67_RS01850 (NCTC11404_00357) - 402370..403362 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  DQN67_RS01855 (NCTC11404_00358) rplQ 403381..403764 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  DQN67_RS01860 (NCTC11404_00359) ssb 403831..404310 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  DQN67_RS01865 (NCTC11404_00360) - 404394..405761 (-) 1368 WP_027224265.1 MFS transporter -
  DQN67_RS01870 (NCTC11404_00361) fabL 405923..406681 (+) 759 WP_027224264.1 enoyl-[acyl-carrier-protein] reductase FabL -
  DQN67_RS01875 (NCTC11404_00362) - 406752..407165 (+) 414 WP_010946108.1 acyl carrier protein -
  DQN67_RS01880 (NCTC11404_00363) - 407165..408061 (+) 897 WP_027224263.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=1140599 DQN67_RS01860 WP_011213016.1 403831..404310(-) (ssb) [Legionella pneumophila strain NCTC11404]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1140599 DQN67_RS01860 WP_011213016.1 403831..404310(-) (ssb) [Legionella pneumophila strain NCTC11404]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGTAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATACA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGAAGCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment