Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   DQN21_RS11060 Genome accession   NZ_LS483409
Coordinates   2214085..2215449 (-) Length   454 a.a.
NCBI ID   WP_077497726.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2209085..2220449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS11025 (NCTC13773_02240) rmuC 2209790..2211064 (-) 1275 WP_012962509.1 DNA recombination protein RmuC -
  DQN21_RS11030 (NCTC13773_02241) - 2211066..2211695 (-) 630 WP_013643475.1 thiamine diphosphokinase -
  DQN21_RS11035 (NCTC13773_02242) rpe 2211688..2212350 (-) 663 WP_013643476.1 ribulose-phosphate 3-epimerase -
  DQN21_RS11040 (NCTC13773_02243) rsgA 2212357..2213229 (-) 873 WP_077497721.1 ribosome small subunit-dependent GTPase A -
  DQN21_RS11055 (NCTC13773_02246) - 2213752..2213952 (-) 201 WP_077497723.1 bacteriocin -
  DQN21_RS11060 (NCTC13773_02247) comD/comD3 2214085..2215449 (-) 1365 WP_077497726.1 sensor histidine kinase Regulator
  DQN21_RS11065 (NCTC13773_02248) comE/comE2 2215462..2216190 (-) 729 WP_012962512.1 LytR/AlgR family response regulator transcription factor Regulator
  DQN21_RS11070 (NCTC13773_02249) - 2216289..2216582 (-) 294 WP_009854994.1 bacteriocin immunity protein -
  DQN21_RS11075 (NCTC13773_02250) - 2216633..2216785 (-) 153 WP_231873055.1 hypothetical protein -
  DQN21_RS11080 (NCTC13773_02251) - 2217129..2217440 (-) 312 WP_003066564.1 bacteriocin immunity protein -
  DQN21_RS11085 (NCTC13773_02252) - 2217452..2217601 (-) 150 WP_013643483.1 hypothetical protein -
  DQN21_RS11090 (NCTC13773_02253) - 2217658..2217909 (-) 252 WP_231844599.1 DUF3884 family protein -
  DQN21_RS12630 (NCTC13773_02254) - 2218210..2218350 (+) 141 WP_014295304.1 hypothetical protein -
  DQN21_RS11095 (NCTC13773_02255) - 2218367..2219677 (-) 1311 WP_058621373.1 sensor histidine kinase -
  DQN21_RS11100 (NCTC13773_02256) comE/comE1 2219682..2220413 (-) 732 WP_077497729.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 52384.70 Da        Isoelectric Point: 5.1864

>NTDB_id=1140586 DQN21_RS11060 WP_077497726.1 2214085..2215449(-) (comD/comD3) [Streptococcus gallolyticus strain NCTC13773]
MDLRSLIAFLETFVTFLGYAILFKSITKYRLAVWEWLVSVLVLPILASGFAVVMLLCFADMDGFKTVMIKNIVVLLWFTT
LSYRHDRSLLPRYHIFYGLFPVAVEDILLRTVSYSLAALFSTRINAIGQSWIAHVDIWTPVPIYFMASKLLEIDISNVKK
TLQNYLSSTSLILINLLMAFYFFGIDYVALKSPFGSVGSESFRERVTFVYIILLFLFLFYLNYKYVREQEIELQRQQELE
LISLENYSKHVESLYQEVRSFRHDYANILLSIGESIERNDLETIKKIYNDITNDSEKFVKNSKFDLTRLSHISNSAIKSL
MSAKFLEAENLGITITLEVPEVVECPKIPLITYIRILAILFDNAIEAAVLSDVPKISVANFYQDDNFVFMIENSTKEDSI
PIDNIYQKGYSSKGDNRGIGLATVSEFQQEYDNLSIETSSSNHFFRQILRIYES

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1140586 DQN21_RS11060 WP_077497726.1 2214085..2215449(-) (comD/comD3) [Streptococcus gallolyticus strain NCTC13773]
TTGGATTTAAGGAGTTTAATTGCGTTTTTAGAAACCTTTGTCACGTTTTTGGGGTATGCTATCCTATTTAAAAGTATTAC
CAAGTACCGACTTGCCGTTTGGGAATGGCTAGTATCTGTTTTAGTGTTGCCAATTCTTGCATCAGGCTTTGCGGTTGTCA
TGCTTTTGTGCTTTGCGGATATGGACGGTTTCAAAACTGTCATGATTAAAAATATTGTGGTGTTGTTGTGGTTTACCACC
TTATCTTACCGTCATGATAGGTCCTTGCTACCAAGGTATCATATTTTTTATGGGCTTTTCCCAGTTGCGGTAGAGGATAT
TCTGCTTAGGACGGTGTCTTACTCATTAGCGGCGCTATTTTCCACAAGAATCAATGCTATCGGACAGTCATGGATTGCTC
ATGTTGACATCTGGACACCCGTTCCGATTTATTTTATGGCTTCAAAATTACTGGAAATTGATATTTCAAATGTCAAAAAG
ACCTTGCAAAATTACCTTAGCTCGACAAGTCTTATCTTGATTAATTTGCTAATGGCTTTCTATTTTTTTGGAATAGATTA
TGTCGCTTTGAAAAGTCCATTTGGTAGCGTAGGTAGCGAATCGTTTAGAGAAAGAGTTACTTTTGTTTACATTATTCTTC
TTTTTCTATTTTTGTTCTATCTGAATTACAAATACGTCCGTGAACAAGAGATAGAGTTACAAAGGCAGCAGGAGCTAGAA
TTAATTTCGCTGGAAAATTACAGCAAACATGTGGAAAGTTTGTACCAAGAGGTCAGAAGTTTCAGACATGACTATGCCAA
TATTTTGTTGAGTATAGGAGAAAGTATCGAGCGAAATGACTTGGAAACTATCAAAAAAATCTACAATGACATTACTAATG
ATTCTGAGAAGTTCGTCAAAAATAGCAAATTCGATTTGACACGCTTGTCTCATATTTCAAATAGTGCCATCAAAAGTTTG
ATGTCTGCTAAATTTCTAGAGGCTGAAAATCTCGGAATCACCATTACTTTGGAAGTTCCTGAAGTCGTGGAGTGTCCCAA
AATTCCACTTATTACCTACATTCGCATCCTTGCTATCTTGTTTGATAATGCGATTGAAGCTGCGGTGTTATCAGATGTTC
CTAAAATATCCGTAGCGAATTTTTATCAAGATGATAACTTTGTTTTTATGATTGAAAATTCAACCAAAGAAGATAGTATT
CCGATTGATAACATTTATCAAAAAGGCTATTCAAGCAAAGGAGACAATCGTGGTATTGGCTTAGCAACAGTTAGTGAATT
TCAGCAAGAATATGACAATCTCTCCATTGAAACAAGCAGCTCAAATCACTTCTTTAGACAAATTTTGAGAATCTATGAAT
CCTAG

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(354-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

50.109

100

0.504
  comD/comD2 Streptococcus equinus JB1

57.372

68.722

0.394

Multiple sequence alignment