Detailed information NTG1140421

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: DQN96_RS17415
• Genome accession: NZ_LS483406
• Coordinates: 3715068..3716126 (-)
• Length: 352 a.a.
• NCBI ID: WP_005410860.1
• Uniprot ID: A0A854DVP1
• Organism: Stenotrophomonas maltophilia strain NCTC10498
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3710068..3721126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN96_RS17395 (NCTC10498_03467)	-	3711024..3712991 (-)	1968	WP_005410855.1	type IV pilus secretin PilQ	-
DQN96_RS17400 (NCTC10498_03468)	-	3713013..3713516 (-)	504	WP_044571441.1	pilus assembly protein PilP	-
DQN96_RS17405 (NCTC10498_03469)	pilO	3713543..3714199 (-)	657	WP_005410857.1	type 4a pilus biogenesis protein PilO	-
DQN96_RS17410 (NCTC10498_03470)	-	3714196..3715068 (-)	873	WP_111723033.1	PilN domain-containing protein	-
DQN96_RS17415 (NCTC10498_03471)	pilM	3715068..3716126 (-)	1059	WP_005410860.1	pilus assembly protein PilM	Machinery gene
DQN96_RS17420 (NCTC10498_03472)	-	3716346..3718769 (+)	2424	WP_005410861.1	penicillin-binding protein 1A	-
DQN96_RS17425 (NCTC10498_03473)	-	3718980..3719624 (+)	645	WP_060380571.1	hypothetical protein	-
DQN96_RS17430 (NCTC10498_03474)	-	3719801..3720544 (-)	744	WP_060380572.1	hypothetical protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37739.38 Da
• Isoelectric Point: 4.4047

>NTDB_id=1140421 DQN96_RS17415 WP_005410860.1 3715068..3716126(-) (pilM) [Stenotrophomonas maltophilia strain NCTC10498]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1140421 DQN96_RS17415 WP_005410860.1 3715068..3716126(-) (pilM) [Stenotrophomonas maltophilia strain NCTC10498]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTAGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCCATGAACCGTTCAGGCAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGT
GGTCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGACGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGCGGGCTGCCGGAAATGGTCGAGGAGCAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGTTGGGCCCGAAGGTGAACGCGCATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854DVP1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	51.136	100	0.511
comM	Acinetobacter nosocomialis M2	51.136	100	0.511
comM	Acinetobacter baylyi ADP1	50	100	0.5
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477