Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQO23_RS30260 Genome accession   NZ_LS483395
Coordinates   6607043..6607564 (-) Length   173 a.a.
NCBI ID   WP_026382027.1    Uniprot ID   A0A6S7E5D3
Organism   Achromobacter xylosoxidans strain NCTC10808     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6602043..6612564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO23_RS30240 (NCTC10808_06030) - 6604150..6604740 (-) 591 WP_006389668.1 TetR/AcrR family transcriptional regulator -
  DQO23_RS30245 (NCTC10808_06031) - 6604872..6605177 (-) 306 WP_020925844.1 DUF4148 domain-containing protein -
  DQO23_RS30250 (NCTC10808_06032) - 6605258..6605563 (-) 306 WP_024070765.1 DUF4148 domain-containing protein -
  DQO23_RS30255 (NCTC10808_06033) - 6605828..6606556 (-) 729 WP_024070766.1 class I SAM-dependent methyltransferase -
  DQO23_RS30260 (NCTC10808_06034) ssb 6607043..6607564 (-) 522 WP_026382027.1 single-stranded DNA-binding protein Machinery gene
  DQO23_RS30265 (NCTC10808_06035) - 6607847..6609031 (-) 1185 WP_024070768.1 MFS transporter -
  DQO23_RS30270 (NCTC10808_06036) uvrA 6609166..6612021 (+) 2856 WP_020925836.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18656.68 Da        Isoelectric Point: 5.9656

>NTDB_id=1140134 DQO23_RS30260 WP_026382027.1 6607043..6607564(-) (ssb) [Achromobacter xylosoxidans strain NCTC10808]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1140134 DQO23_RS30260 WP_026382027.1 6607043..6607564(-) (ssb) [Achromobacter xylosoxidans strain NCTC10808]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCCGC
AATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCCTCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTAGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGATGGCGGCGGCGGTGGCGGCAGCTATGGCGGAGGCGGCGGTTACGACGACGCGCCGGCAC
GCCAGCCGCAGCAACGCGCCCCGGCCCAGCGCCCGGCGCCGCAACAGCGTCCGGCACCGCAGGCCGCGCCCGCCGGTGGC
GGTGCCAACCTGGCCGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7E5D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Neisseria meningitidis MC58

52.571

100

0.532

Multiple sequence alignment