Detailed information NTG1139936

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: DQM93_RS09835
• Genome accession: NZ_LS483390
• Coordinates: 1833547..1834008 (-)
• Length: 153 a.a.
• NCBI ID: WP_000250534.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain NCTC13276
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1828547..1839008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM93_RS09805 (NCTC13276_01880)	-	1828851..1829675 (-)	825	WP_000727904.1	membrane protein insertase YidC	-
DQM93_RS09810 (NCTC13276_01881)	rnpA	1829650..1830021 (-)	372	WP_000739246.1	ribonuclease P protein component	-
DQM93_RS11720	-	1830038..1830169 (-)	132	WP_000768904.1	hypothetical protein	-
DQM93_RS09815 (NCTC13276_01882)	-	1830170..1831360 (-)	1191	WP_000167757.1	acetate kinase	-
DQM93_RS09820 (NCTC13276_01883)	comYH	1831411..1832364 (-)	954	WP_000345135.1	class I SAM-dependent methyltransferase	Machinery gene
DQM93_RS09825	-	1832425..1833019 (-)	595	Protein_1830	class I SAM-dependent methyltransferase	-
DQM93_RS09830 (NCTC13276_01886)	comGG/cglG	1833156..1833569 (-)	414	WP_000265622.1	competence type IV pilus minor pilin ComGG	Machinery gene
DQM93_RS09835 (NCTC13276_01887)	comGF/cglF	1833547..1834008 (-)	462	WP_000250534.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQM93_RS09840 (NCTC13276_01888)	comGE/cglE	1833971..1834273 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQM93_RS09845 (NCTC13276_01889)	comGD/cglD	1834236..1834640 (-)	405	WP_000588026.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQM93_RS09850 (NCTC13276_01890)	comGC/cglC	1834633..1834959 (-)	327	WP_000738626.1	comG operon protein ComGC	Machinery gene
DQM93_RS09855 (NCTC13276_01891)	comGB/cglB	1834961..1835977 (-)	1017	WP_074196785.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQM93_RS09860 (NCTC13276_01892)	comGA/cglA/cilD	1835925..1836866 (-)	942	WP_000249564.1	competence type IV pilus ATPase ComGA	Machinery gene
DQM93_RS09865 (NCTC13276_01893)	-	1836942..1837307 (-)	366	WP_000286415.1	DUF1033 family protein	-
DQM93_RS09870 (NCTC13276_01894)	-	1837458..1838516 (-)	1059	WP_000649468.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 17972.67 Da
• Isoelectric Point: 9.6092

>NTDB_id=1139936 DQM93_RS09835 WP_000250534.1 1833547..1834008(-) (comGF/cglF) [Streptococcus pneumoniae strain NCTC13276]
MVQNSCWQSKSHKVKAFTLLESLLALIVISGGLLLFQAMSQLLISEVRYQQQSEQKEWLLFVDQLEVELDRSQFEKVEGN
RLYMKQDGKDIAIGKSKSDDFRKTNARGRGYQPMVYGLKSVRITEDNQLVRFHFQFQKGLEREFIYRVEKEKS

Nucleotide

• Length: 462 bp

>NTDB_id=1139936 DQM93_RS09835 WP_000250534.1 1833547..1834008(-) (comGF/cglF) [Streptococcus pneumoniae strain NCTC13276]
ATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAAGGTCAAGGCTTTTACCTTGTTAGAATCCCTGCTTGCCCTCAT
TGTCATCAGTGGGGGATTACTCCTTTTTCAAGCTATGAGTCAGCTCCTCATTTCAGAAGTTCGCTACCAGCAACAAAGCG
AGCAAAAGGAGTGGCTCTTGTTTGTGGACCAACTTGAGGTAGAATTAGACCGTTCGCAGTTCGAAAAAGTAGAAGGCAAT
CGCCTATACATGAAGCAAGATGGCAAGGACATCGCCATCGGTAAGTCAAAGTCAGATGATTTCCGTAAAACGAATGCTCG
TGGTCGAGGTTATCAGCCTATGGTTTATGGACTCAAATCTGTACGGATTACAGAGGACAATCAACTGGTTCGCTTTCATT
TCCAGTTCCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (45-141)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae Rx1	100	100	1
comGF/cglF	Streptococcus pneumoniae D39	100	100	1
comGF/cglF	Streptococcus pneumoniae R6	100	100	1
comGF/cglF	Streptococcus pneumoniae TIGR4	100	100	1
comGF/cglF	Streptococcus mitis SK321	90.85	100	0.909
comGF/cglF	Streptococcus mitis NCTC 12261	89.542	100	0.895