Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DQM93_RS09820 Genome accession   NZ_LS483390
Coordinates   1831411..1832364 (-) Length   317 a.a.
NCBI ID   WP_000345135.1    Uniprot ID   A0A2U3RW99
Organism   Streptococcus pneumoniae strain NCTC13276     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826411..1837364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM93_RS09795 (NCTC13276_01878) - 1827172..1827795 (-) 624 WP_000932644.1 hypothetical protein -
  DQM93_RS09800 (NCTC13276_01879) jag 1827846..1828832 (-) 987 WP_000260012.1 RNA-binding cell elongation regulator Jag/EloR -
  DQM93_RS09805 (NCTC13276_01880) - 1828851..1829675 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  DQM93_RS09810 (NCTC13276_01881) rnpA 1829650..1830021 (-) 372 WP_000739246.1 ribonuclease P protein component -
  DQM93_RS11720 - 1830038..1830169 (-) 132 WP_000768904.1 hypothetical protein -
  DQM93_RS09815 (NCTC13276_01882) - 1830170..1831360 (-) 1191 WP_000167757.1 acetate kinase -
  DQM93_RS09820 (NCTC13276_01883) comYH 1831411..1832364 (-) 954 WP_000345135.1 class I SAM-dependent methyltransferase Machinery gene
  DQM93_RS09825 - 1832425..1833019 (-) 595 Protein_1830 class I SAM-dependent methyltransferase -
  DQM93_RS09830 (NCTC13276_01886) comGG/cglG 1833156..1833569 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  DQM93_RS09835 (NCTC13276_01887) comGF/cglF 1833547..1834008 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM93_RS09840 (NCTC13276_01888) comGE/cglE 1833971..1834273 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQM93_RS09845 (NCTC13276_01889) comGD/cglD 1834236..1834640 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQM93_RS09850 (NCTC13276_01890) comGC/cglC 1834633..1834959 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  DQM93_RS09855 (NCTC13276_01891) comGB/cglB 1834961..1835977 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM93_RS09860 (NCTC13276_01892) comGA/cglA/cilD 1835925..1836866 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM93_RS09865 (NCTC13276_01893) - 1836942..1837307 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35756.99 Da        Isoelectric Point: 4.2748

>NTDB_id=1139934 DQM93_RS09820 WP_000345135.1 1831411..1832364(-) (comYH) [Streptococcus pneumoniae strain NCTC13276]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKENNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGAIFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1139934 DQM93_RS09820 WP_000345135.1 1831411..1832364(-) (comYH) [Streptococcus pneumoniae strain NCTC13276]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAGGAGAACAATC
AAACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTATTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U3RW99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment