Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQM45_RS08710 | Genome accession | NZ_LS483388 |
| Coordinates | 1747590..1748081 (-) | Length | 163 a.a. |
| NCBI ID | WP_003083754.1 | Uniprot ID | - |
| Organism | Streptococcus porcinus strain NCTC10999 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1742590..1753081
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM45_RS08695 (NCTC10999_01769) | - | 1745232..1746176 (+) | 945 | WP_003085337.1 | magnesium transporter CorA family protein | - |
| DQM45_RS08700 (NCTC10999_01770) | - | 1746291..1746959 (+) | 669 | WP_003083341.1 | DUF1129 domain-containing protein | - |
| DQM45_RS08705 (NCTC10999_01771) | rpsR | 1747207..1747446 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQM45_RS08710 (NCTC10999_01772) | ssb | 1747590..1748081 (-) | 492 | WP_003083754.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM45_RS08715 (NCTC10999_01773) | rpsF | 1748105..1748395 (-) | 291 | WP_003084800.1 | 30S ribosomal protein S6 | - |
| DQM45_RS08720 (NCTC10999_01774) | mutY | 1748770..1749912 (+) | 1143 | WP_003082796.1 | A/G-specific adenine glycosylase | - |
| DQM45_RS08725 (NCTC10999_01775) | trxA | 1749999..1750313 (-) | 315 | WP_003084413.1 | thioredoxin | - |
| DQM45_RS08730 (NCTC10999_01776) | - | 1750431..1752764 (-) | 2334 | WP_003083225.1 | endonuclease MutS2 | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18109.89 Da Isoelectric Point: 4.9119
>NTDB_id=1139815 DQM45_RS08710 WP_003083754.1 1747590..1748081(-) (ssb) [Streptococcus porcinus strain NCTC10999]
MINNVVLVGRMTKDAELRYTPNQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNSGGFNNASTNSNYSAPSQQTPNFGRDESPFGNSNPMEISDDD
LPF
MINNVVLVGRMTKDAELRYTPNQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNSGGFNNASTNSNYSAPSQQTPNFGRDESPFGNSNPMEISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1139815 DQM45_RS08710 WP_003083754.1 1747590..1748081(-) (ssb) [Streptococcus porcinus strain NCTC10999]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAGCTCCGTTATACCCCAAACCAAGTAGCAGTAGC
TACTTTTACCCTTGCTGTCAATCGCACTTTCAAGAGCCAAAATGGGGAGCGTGAAGCAGATTTCATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCGAATTGGGCAAAAAAAGGTGCTTTAATCGGAATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTTTACGTAACGGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCATCTAATTCTTATAATAGTGGTGGTTTTAATAACGCATCAACTAATAGTAATTATTCTGCTC
CTTCTCAACAAACACCTAACTTTGGTCGAGATGAAAGTCCATTTGGTAATTCAAACCCAATGGAAATTTCAGATGACGAT
CTGCCATTCTAA
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAGCTCCGTTATACCCCAAACCAAGTAGCAGTAGC
TACTTTTACCCTTGCTGTCAATCGCACTTTCAAGAGCCAAAATGGGGAGCGTGAAGCAGATTTCATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCGAATTGGGCAAAAAAAGGTGCTTTAATCGGAATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTTTACGTAACGGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCATCTAATTCTTATAATAGTGGTGGTTTTAATAACGCATCAACTAATAGTAATTATTCTGCTC
CTTCTCAACAAACACCTAACTTTGGTCGAGATGAAAGTCCATTTGGTAATTCAAACCCAATGGAAATTTCAGATGACGAT
CTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.302 |
100 |
0.626 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.382 |
100 |
0.62 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |