Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM63_RS09330 Genome accession   NZ_LS483385
Coordinates   1868191..1868685 (-) Length   164 a.a.
NCBI ID   WP_002896496.1    Uniprot ID   A0A2X3XJA2
Organism   Streptococcus sanguinis strain NCTC7863     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1863191..1873685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS09300 (NCTC7863_01832) - 1863915..1864589 (+) 675 WP_002901378.1 DUF1129 domain-containing protein -
  DQM63_RS09305 (NCTC7863_01833) - 1864607..1864816 (-) 210 WP_002901380.1 DUF1648 domain-containing protein -
  DQM63_RS09310 (NCTC7863_01834) - 1864816..1866423 (-) 1608 WP_002914322.1 hypothetical protein -
  DQM63_RS09315 (NCTC7863_01835) - 1866350..1867063 (-) 714 WP_002914324.1 ABC transporter ATP-binding protein -
  DQM63_RS09320 (NCTC7863_01836) - 1867205..1867861 (-) 657 WP_002914326.1 TetR/AcrR family transcriptional regulator -
  DQM63_RS09325 (NCTC7863_01837) rpsR 1867915..1868154 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQM63_RS09330 (NCTC7863_01838) ssbA 1868191..1868685 (-) 495 WP_002896496.1 single-stranded DNA-binding protein Machinery gene
  DQM63_RS09335 (NCTC7863_01839) rpsF 1868697..1868987 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  DQM63_RS09340 (NCTC7863_01840) hutI 1869166..1870431 (-) 1266 WP_002914329.1 imidazolonepropionase -
  DQM63_RS09345 (NCTC7863_01841) - 1870631..1872661 (+) 2031 WP_002914331.1 urocanate hydratase -
  DQM63_RS09350 (NCTC7863_01842) ftcD 1872776..1873675 (+) 900 WP_002903832.1 glutamate formimidoyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18104.75 Da        Isoelectric Point: 4.7187

>NTDB_id=1139648 DQM63_RS09330 WP_002896496.1 1868191..1868685(-) (ssbA) [Streptococcus sanguinis strain NCTC7863]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRSNREGQSSGGYGGNSFGGSSAPSYGSADSSNQVPNFSRDESPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1139648 DQM63_RS09330 WP_002896496.1 1868191..1868685(-) (ssbA) [Streptococcus sanguinis strain NCTC7863]
ATGATTAATAACGTTGTACTGGTGGGTCGCATGACCCGTGATGCCGAGCTTCGCTATACACCGCAGAACCAAGCGGTCGC
AACATTTACTCTGGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGCGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAATTGGGCCAAAAAAGGAGCCCTGATCGGAATTACAGGCCGTATTCAAACGCGT
AACTACGAGAATCAGCAAGGCCAGCGTGTCTATGTCACAGAAGTTGTTGCGGACAATTTCCAACTCTTGGAAAGCCGCTC
TAATCGTGAAGGTCAGTCATCTGGCGGATACGGTGGGAACAGCTTCGGCGGCAGCTCTGCTCCAAGTTATGGCAGTGCAG
ACTCGTCTAACCAAGTACCGAACTTTTCTCGTGATGAGAGCCCATTTGGCAATTCTAACCCAATGGATATCTCAGACGAC
GATCTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3XJA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.634

0.366
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.724

70.732

0.366

Multiple sequence alignment