Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQM87_RS01945 | Genome accession | NZ_LS483384 |
| Coordinates | 349868..350359 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC13743 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 344868..355359
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM87_RS01915 (NCTC13743_00380) | - | 346057..346557 (+) | 501 | WP_030126907.1 | phosphatase PAP2 family protein | - |
| DQM87_RS01920 (NCTC13743_00381) | trxA | 346620..346952 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| DQM87_RS01925 (NCTC13743_00382) | - | 347004..347591 (-) | 588 | WP_020837707.1 | helix-turn-helix domain-containing protein | - |
| DQM87_RS01930 (NCTC13743_00383) | mutY | 347768..348922 (-) | 1155 | WP_002983107.1 | A/G-specific adenine glycosylase | - |
| DQM87_RS01935 (NCTC13743_00384) | - | 349090..349383 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| DQM87_RS01940 (NCTC13743_00385) | rpsF | 349556..349846 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQM87_RS01945 (NCTC13743_00386) | ssb | 349868..350359 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM87_RS01950 (NCTC13743_00387) | rpsR | 350524..350763 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQM87_RS01955 (NCTC13743_00388) | - | 350896..351552 (-) | 657 | WP_111704923.1 | DUF1129 domain-containing protein | - |
| DQM87_RS01960 (NCTC13743_00389) | - | 351685..352629 (-) | 945 | WP_011888617.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1139564 DQM87_RS01945 WP_002983122.1 349868..350359(+) (ssb) [Streptococcus pyogenes strain NCTC13743]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1139564 DQM87_RS01945 WP_002983122.1 349868..350359(+) (ssb) [Streptococcus pyogenes strain NCTC13743]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |