Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQM67_RS08140 Genome accession   NZ_LS483383
Coordinates   1611587..1613545 (-) Length   652 a.a.
NCBI ID   WP_005591774.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606587..1618545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS08110 (NCTC12479_01578) - 1606596..1607585 (+) 990 WP_005591780.1 PTS sugar transporter subunit IIB -
  DQM67_RS08115 (NCTC12479_01579) - 1607630..1608433 (+) 804 WP_005591779.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  DQM67_RS08120 (NCTC12479_01580) - 1608452..1609363 (+) 912 WP_005591778.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  DQM67_RS08125 (NCTC12479_01581) - 1609434..1609805 (+) 372 WP_005591777.1 DUF956 family protein -
  DQM67_RS08130 (NCTC12479_01583) serS 1610019..1611296 (+) 1278 WP_005592303.1 serine--tRNA ligase -
  DQM67_RS08140 (NCTC12479_01584) amiA3 1611587..1613545 (-) 1959 WP_005591774.1 peptide ABC transporter substrate-binding protein Regulator
  DQM67_RS08150 (NCTC12479_01585) pbp3 1613825..1615102 (+) 1278 WP_005591772.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM67_RS08155 (NCTC12479_01586) sufB 1615295..1616707 (-) 1413 WP_005591771.1 Fe-S cluster assembly protein SufB -
  DQM67_RS08160 (NCTC12479_01587) sufU 1616725..1617162 (-) 438 WP_005591770.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DQM67_RS08165 (NCTC12479_01588) - 1617149..1618381 (-) 1233 WP_005591769.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72631.74 Da        Isoelectric Point: 4.6933

>NTDB_id=1139526 DQM67_RS08140 WP_005591774.1 1611587..1613545(-) (amiA3) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MKKSKWLAITGLVAASALFLAACGKSSTSSAKTYSYVYNTDPDTLDYVNSNRSSTSDVIANLVDGLLENDQYGNLIPSLA
EDWTVSKDGLTYTYKLRKDAKWYTAEGEEYAAVKAQDFVTGLKHAADEKSEALPIVQNSIKGLDAYIKGESNDFSTVGVK
AIDDYTVQYTLNQPESYWNSKTTMGILFPINEEFLKKEGKDFGTVKPSGILYNGPYVLKSFTSKSVIEYSKNQNYWDKDN
VKIEDVKLTYYDGSDQESLIRNFTDGAYTQARLYPTSSNYASVEKKYKDNIIFTPQNSTSYFYAFNLNRLAYSHTSKTDA
QKAASKEAIQNKDFRQAINFAFDRKSFGAQMNGNEGATKIIRSLLVPPSFVQVDGKDFSDVVESQLASYGDEWQGVKLAD
AQDSIYNPEKAKAEFAKAKEALQAQGVEFPIHLDVPVDQTDKIMVQRTNSFKQSVEAALGQENVVIDVHQMSSDDFDNST
YFAETAAQKDYDLNMSGWSADYQDPVTYLNIFNPETGDILDNIGLTKGQNQDLASKVGLTDYKALLDQADAEKQDTNARY
TKYAAAQAWLTDSSIVIPSISAGASPTVQKVVPFTKAYSYVGIKGDTYVFKGMELQDKVLTVADYQKALEKWEKEKEESN
KKAQEELASHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1139526 DQM67_RS08140 WP_005591774.1 1611587..1613545(-) (amiA3) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAAAAAATCTAAATGGTTGGCTATTACTGGTTTGGTTGCAGCATCAGCGCTATTCTTAGCTGCTTGTGGCAAGTCAAG
CACCAGCTCGGCAAAGACATATTCTTATGTCTATAATACAGATCCAGATACATTGGATTATGTAAACTCCAATCGCTCCT
CCACTTCTGACGTTATTGCCAATTTGGTCGACGGTCTTTTAGAAAATGATCAATATGGGAATCTTATCCCTTCATTGGCT
GAAGACTGGACTGTGTCTAAAGATGGCCTAACTTATACTTATAAGTTGCGTAAGGACGCTAAATGGTACACAGCAGAAGG
TGAAGAATATGCTGCTGTCAAGGCACAAGACTTTGTAACAGGGCTCAAGCACGCTGCAGATGAAAAATCGGAAGCATTAC
CAATCGTGCAAAACTCTATCAAGGGATTAGATGCTTATATCAAAGGAGAAAGCAATGATTTCTCTACTGTAGGTGTCAAG
GCAATCGACGATTATACAGTCCAATACACCCTGAATCAGCCAGAAAGCTACTGGAATTCTAAGACAACGATGGGCATTCT
CTTCCCAATTAACGAAGAATTTCTGAAGAAAGAAGGCAAGGACTTTGGTACCGTGAAACCTTCCGGTATCCTCTACAATG
GTCCATATGTATTAAAGTCATTTACTTCTAAGTCTGTTATCGAATATTCTAAAAACCAAAACTATTGGGACAAGGATAAT
GTGAAGATCGAAGATGTCAAGCTGACTTACTATGATGGTTCTGACCAAGAGTCATTGATCCGTAACTTTACTGATGGTGC
TTACACACAAGCTCGTCTCTATCCGACTAGCTCAAACTACGCATCAGTAGAAAAGAAATACAAAGACAACATCATTTTTA
CTCCACAAAACTCAACTAGCTATTTCTATGCCTTTAACTTGAATCGTCTGGCTTATAGCCACACTTCTAAGACAGATGCC
CAAAAAGCTGCCAGCAAAGAAGCAATTCAAAATAAAGACTTCCGCCAAGCAATTAACTTCGCTTTTGACCGTAAATCCTT
TGGTGCCCAGATGAATGGTAATGAAGGAGCAACGAAAATTATCAGAAGCTTGCTTGTGCCTCCTAGTTTTGTGCAAGTAG
ATGGCAAGGACTTCTCGGATGTCGTTGAATCACAGTTGGCTTCTTATGGCGATGAATGGCAAGGTGTCAAATTAGCTGAT
GCCCAAGATAGCATTTACAACCCAGAAAAGGCCAAGGCAGAATTTGCTAAAGCTAAAGAAGCTTTGCAAGCCCAGGGAGT
TGAATTCCCAATTCATCTAGATGTACCAGTTGACCAAACTGATAAAATCATGGTGCAGCGGACCAATTCCTTCAAACAAT
CTGTTGAGGCAGCTCTAGGCCAAGAAAACGTTGTGATTGACGTACATCAAATGTCATCAGACGATTTTGATAACTCTACT
TACTTCGCAGAAACAGCTGCCCAAAAGGACTATGACCTCAACATGTCTGGTTGGTCAGCAGACTACCAAGATCCAGTGAC
TTATCTGAATATCTTTAACCCAGAGACAGGGGATATCTTGGACAATATTGGTCTGACAAAAGGCCAAAACCAAGACCTTG
CTTCCAAGGTTGGTTTAACGGACTACAAAGCGCTTTTGGATCAGGCAGATGCAGAAAAGCAAGATACCAATGCTCGCTAT
ACGAAATATGCAGCAGCGCAGGCTTGGTTAACAGATAGTTCTATTGTGATCCCATCTATTTCTGCAGGCGCTTCACCAAC
GGTTCAAAAGGTCGTACCATTTACCAAAGCCTACTCTTATGTAGGTATCAAGGGCGATACCTATGTATTTAAGGGAATGG
AGCTTCAAGATAAGGTCTTAACAGTGGCTGATTATCAAAAAGCATTGGAAAAATGGGAAAAAGAAAAAGAAGAATCAAAT
AAAAAAGCTCAAGAAGAGTTAGCAAGTCACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.535

100

0.571
  amiA Streptococcus salivarius strain HSISS4

56.707

100

0.571
  amiA3 Streptococcus thermophilus LMG 18311

56.383

100

0.569

Multiple sequence alignment