Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DQM75_RS06765 Genome accession   NZ_LS483380
Coordinates   1421742..1422464 (-) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416742..1427464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS06740 (NCTC11824_01355) pstB 1416907..1417659 (-) 753 WP_042670929.1 phosphate ABC transporter ATP-binding protein PstB -
  DQM75_RS06745 (NCTC11824_01356) pstA 1417661..1418476 (-) 816 WP_111692603.1 phosphate ABC transporter permease PstA -
  DQM75_RS06750 (NCTC11824_01357) pstC 1418469..1419332 (-) 864 WP_111692604.1 phosphate ABC transporter permease subunit PstC -
  DQM75_RS06755 (NCTC11824_01358) - 1419402..1420274 (-) 873 WP_111692605.1 substrate-binding domain-containing protein -
  DQM75_RS06760 (NCTC11824_01359) pnpS 1420433..1421758 (-) 1326 WP_111692606.1 two-component system histidine kinase PnpS -
  DQM75_RS06765 (NCTC11824_01360) vicR 1421742..1422464 (-) 723 WP_012677660.1 response regulator transcription factor Regulator
  DQM75_RS10100 (NCTC11824_01361) - 1422636..1422791 (+) 156 WP_012515968.1 SPJ_0845 family protein -
  DQM75_RS06770 (NCTC11824_01362) - 1422832..1423734 (+) 903 WP_021320980.1 permease -
  DQM75_RS06775 (NCTC11824_01363) - 1423734..1424549 (+) 816 WP_014623169.1 TIGR03943 family putative permease subunit -
  DQM75_RS06780 (NCTC11824_01364) - 1424735..1426156 (-) 1422 WP_012679829.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=1139341 DQM75_RS06765 WP_012677660.1 1421742..1422464(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1139341 DQM75_RS06765 WP_012677660.1 1421742..1422464(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGCACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment