Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQM54_RS09345 Genome accession   NZ_LS483375
Coordinates   1899149..1899640 (-) Length   163 a.a.
NCBI ID   WP_012130902.1    Uniprot ID   A0AAP2K452
Organism   Streptococcus gordonii strain NCTC3165     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1894149..1904640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS09310 (NCTC3165_01852) - 1894234..1895049 (+) 816 WP_111724162.1 hypothetical protein -
  DQM54_RS09315 (NCTC3165_01853) - 1895052..1895519 (+) 468 WP_008809859.1 hypothetical protein -
  DQM54_RS10945 (NCTC3165_01854) - 1895641..1895784 (-) 144 WP_223350284.1 DUF1648 domain-containing protein -
  DQM54_RS09325 (NCTC3165_01855) - 1895835..1897445 (-) 1611 WP_061599493.1 hypothetical protein -
  DQM54_RS09330 (NCTC3165_01856) - 1897372..1898085 (-) 714 WP_061599492.1 ABC transporter ATP-binding protein -
  DQM54_RS09335 (NCTC3165_01857) - 1898161..1898817 (-) 657 WP_080937016.1 TetR/AcrR family transcriptional regulator -
  DQM54_RS09340 (NCTC3165_01858) rpsR 1898871..1899110 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQM54_RS09345 (NCTC3165_01859) ssb 1899149..1899640 (-) 492 WP_012130902.1 single-stranded DNA-binding protein Machinery gene
  DQM54_RS09350 (NCTC3165_01860) rpsF 1899657..1899947 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  DQM54_RS09355 (NCTC3165_01861) folE 1900160..1900723 (+) 564 WP_008810025.1 GTP cyclohydrolase I FolE -
  DQM54_RS09360 (NCTC3165_01862) - 1900771..1901592 (+) 822 WP_045773435.1 PrsW family glutamic-type intramembrane protease -
  DQM54_RS09365 (NCTC3165_01863) - 1901686..1902444 (-) 759 WP_045634141.1 epoxyqueuosine reductase QueH -
  DQM54_RS09370 (NCTC3165_01864) groL 1902568..1904190 (-) 1623 WP_045773434.1 chaperonin GroEL -
  DQM54_RS09375 (NCTC3165_01865) groES 1904213..1904494 (-) 282 WP_045504448.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18152.89 Da        Isoelectric Point: 5.2060

>NTDB_id=1139143 DQM54_RS09345 WP_012130902.1 1899149..1899640(-) (ssb) [Streptococcus gordonii strain NCTC3165]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAPSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1139143 DQM54_RS09345 WP_012130902.1 1899149..1899640(-) (ssb) [Streptococcus gordonii strain NCTC3165]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTTCGCTATACTCCGCAGAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGAAACTTTAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATTT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTCGGAATTACAGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGATAACTTCCAACTATTGGAAAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGCTATACTCCAAATAACTTTGGCGGTAATGCAGCACCAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment