Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQM54_RS02990 Genome accession   NZ_LS483375
Coordinates   620919..621584 (+) Length   221 a.a.
NCBI ID   WP_111723396.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 615919..626584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS02965 (NCTC3165_00587) - 616083..617486 (+) 1404 WP_111723394.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQM54_RS02970 (NCTC3165_00588) - 617483..617869 (+) 387 WP_008808599.1 S1 RNA-binding domain-containing protein -
  DQM54_RS02975 (NCTC3165_00589) cysK 617906..618835 (-) 930 WP_008808600.1 cysteine synthase A -
  DQM54_RS02980 (NCTC3165_00590) - 618933..619565 (-) 633 WP_061593780.1 YigZ family protein -
  DQM54_RS02985 (NCTC3165_00591) comFA/cflA 619621..620922 (+) 1302 WP_111723395.1 DEAD/DEAH box helicase Machinery gene
  DQM54_RS02990 (NCTC3165_00592) comFC/cflB 620919..621584 (+) 666 WP_111723396.1 ComF family protein Machinery gene
  DQM54_RS02995 (NCTC3165_00593) hpf 621669..622211 (+) 543 WP_012000104.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25974.92 Da        Isoelectric Point: 8.0583

>NTDB_id=1139107 DQM54_RS02990 WP_111723396.1 620919..621584(+) (comFC/cflB) [Streptococcus gordonii strain NCTC3165]
MRQCLLCLSLLEEQLNFIDLLQLKRKENDVCQECLNTFEEIPEEHCQSCYKAGDKILCQDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFSLSIRRELKKYQSYTILSLPLSESKMKTRGFNQVSGLLEAAQIPYQELLKKKESQTQS
SKDRKERLENTGNFYMIENTKIPKKILLVDDIYTTGATLQDAKMTLFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1139107 DQM54_RS02990 WP_111723396.1 620919..621584(+) (comFC/cflB) [Streptococcus gordonii strain NCTC3165]
ATGAGACAATGTCTACTCTGCTTATCCCTATTAGAAGAGCAGTTAAATTTTATAGATTTATTACAATTAAAAAGAAAAGA
AAATGACGTTTGTCAAGAATGCTTAAATACCTTCGAAGAAATTCCAGAAGAACATTGTCAAAGCTGTTATAAAGCTGGGG
ACAAAATTTTATGTCAAGATTGTCAGTACTGGCAGGAAAGAGGGTTAGAAGTGGCTCATAAAAGTTTGTACACTTATAAT
AAGGCTATGAAAGACTATTTTAGTCGTTACAAATTTCAAGGAGATTACCTATTAAGAAATGTGTTTTCCTTAAGTATAAG
AAGAGAATTAAAAAAATACCAAAGTTACACAATTTTAAGCCTCCCTTTAAGTGAAAGTAAGATGAAAACGAGAGGATTCA
ATCAAGTGTCTGGATTGCTTGAAGCTGCACAGATACCTTACCAAGAACTATTAAAGAAAAAAGAAAGCCAGACTCAGTCA
AGTAAAGACAGAAAAGAGAGATTAGAAAACACAGGTAACTTTTACATGATTGAAAATACGAAAATCCCGAAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGTGCAACTTTACAGGATGCAAAAATGACATTATTTGAAAACGGAGCGAAAGAAA
TCATGACATTTTCACTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

50.228

99.095

0.498
  comFC/cflB Streptococcus mitis NCTC 12261

49.772

99.095

0.493
  comFC/cflB Streptococcus pneumoniae Rx1

49.772

99.095

0.493
  comFC/cflB Streptococcus pneumoniae D39

49.772

99.095

0.493
  comFC/cflB Streptococcus pneumoniae R6

49.772

99.095

0.493
  comFC/cflB Streptococcus mitis SK321

49.315

99.095

0.489

Multiple sequence alignment