Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQO01_RS26910 | Genome accession | NZ_LS483372 |
| Coordinates | 5790259..5790786 (-) | Length | 175 a.a. |
| NCBI ID | WP_010467282.1 | Uniprot ID | A0A6L5BQP5 |
| Organism | Pseudomonas fluorescens strain NCTC10038 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5785259..5795786
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQO01_RS26885 (NCTC10038_05443) | - | 5785739..5786494 (-) | 756 | WP_053258264.1 | alpha/beta hydrolase family protein | - |
| DQO01_RS26890 (NCTC10038_05444) | - | 5786484..5787593 (-) | 1110 | WP_053258265.1 | DUF3182 family protein | - |
| DQO01_RS26895 (NCTC10038_05445) | - | 5787836..5788399 (+) | 564 | WP_053258266.1 | cysteine hydrolase family protein | - |
| DQO01_RS26900 (NCTC10038_05446) | tam | 5788421..5789182 (-) | 762 | WP_053258267.1 | trans-aconitate 2-methyltransferase | - |
| DQO01_RS26905 (NCTC10038_05447) | - | 5789284..5790192 (+) | 909 | WP_053258268.1 | LysR family transcriptional regulator | - |
| DQO01_RS26910 (NCTC10038_05448) | ssb | 5790259..5790786 (-) | 528 | WP_010467282.1 | single-stranded DNA-binding protein | Machinery gene |
| DQO01_RS26915 (NCTC10038_05449) | - | 5790796..5792190 (-) | 1395 | WP_053258269.1 | MFS transporter | - |
| DQO01_RS26920 (NCTC10038_05450) | uvrA | 5792369..5795201 (+) | 2833 | Protein_5270 | excinuclease ABC subunit UvrA | - |
| DQO01_RS26925 (NCTC10038_05451) | bfr | 5795267..5795731 (-) | 465 | WP_053258271.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19396.56 Da Isoelectric Point: 5.9314
>NTDB_id=1139006 DQO01_RS26910 WP_010467282.1 5790259..5790786(-) (ssb) [Pseudomonas fluorescens strain NCTC10038]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1139006 DQO01_RS26910 WP_010467282.1 5790259..5790786(-) (ssb) [Pseudomonas fluorescens strain NCTC10038]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGATCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAATCGCGTCAGGCACCGCCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGATCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAATCGCGTCAGGCACCGCCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.065 |
100 |
0.6 |
| ssb | Glaesserella parasuis strain SC1401 |
46.354 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
47.514 |
100 |
0.491 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
100 |
0.491 |