Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   DQM56_RS08440 Genome accession   NZ_LS483368
Coordinates   1751682..1752368 (-) Length   228 a.a.
NCBI ID   WP_111710796.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746682..1757368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS08420 (NCTC6176_01708) dnaI 1747447..1748355 (-) 909 WP_012516249.1 primosomal protein DnaI -
  DQM56_RS08425 (NCTC6176_01709) - 1748356..1749519 (-) 1164 WP_172453712.1 helicase loader -
  DQM56_RS08430 (NCTC6176_01710) nrdR 1749503..1749997 (-) 495 WP_012516251.1 transcriptional regulator NrdR -
  DQM56_RS08435 (NCTC6176_01711) - 1750188..1751678 (-) 1491 WP_012516252.1 HAMP domain-containing histidine kinase -
  DQM56_RS08440 (NCTC6176_01712) covR 1751682..1752368 (-) 687 WP_111710796.1 two-component system response regulator CovR Regulator
  DQM56_RS08445 (NCTC6176_01713) - 1752553..1753086 (-) 534 WP_111710797.1 YceD family protein -
  DQM56_RS08450 (NCTC6176_01714) htpX 1753374..1754267 (-) 894 WP_111710798.1 zinc metalloprotease HtpX -
  DQM56_RS08455 (NCTC6176_01715) - 1754299..1754856 (-) 558 WP_111678523.1 LemA family protein -
  DQM56_RS08460 (NCTC6176_01716) rsmG 1754993..1755706 (+) 714 WP_012516257.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26608.61 Da        Isoelectric Point: 4.6541

>NTDB_id=1138915 DQM56_RS08440 WP_111710796.1 1751682..1752368(-) (covR) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MTKKILIIEDEKNLVRFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1138915 DQM56_RS08440 WP_111710796.1 1751682..1752368(-) (covR) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGACAAAGAAAATTTTAATTATCGAAGATGAAAAGAATCTTGTAAGATTTGTTTCGCTTGAGCTACAACATGAGGGTTA
CGAGGTGACCGTCGAGGTTAATGGTCGTGAGGGCTTGGAGACAGCCCTAGAGAAGGACTTTGACTTAATCCTTCTTGATT
TGATGCTTCCTGAGATGGACGGATTTGAAGTGACACGTCGATTGCAAACAGAAAAAACGACTTACATCATGATGATGACT
GCGCGTGACTCTATTATGGACGTTGTAGCTGGCTTGGATCGTGGTGCTGACGATTACATCGTGAAGCCATTTGCCATTGA
GGAATTGCTGGCGCGTATTCGTGCTATCTTCCGTCGTCAGGACATTGAGTCAGAGAAAAAGACTCCTAGTCAAGGCGTTT
ACCGCGACTTAGTCTTAAACCCTCAAAACCGCTCTGTCAATCGCGGTGATGACGAGATTTCACTGACTAAGCGTGAATAT
GACCTGCTTAATATTTTGATGACAAACATGAATCGTGTCATGACTCGTGAGGAGCTCTTGTCTAACGTTTGGAAATATGA
CGAGGCTGTTGAAACTAACGTTGTTGATGTTTATATTCGTTACCTTCGTGGGAAGATCGATATCCCTGGGAAAGAGTCTT
ACATTCAAACTGTTCGTGGAATGGGTTATGTGATTCGCGAGAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.29

100

0.439
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425

Multiple sequence alignment