Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   DQM56_RS07040 Genome accession   NZ_LS483368
Coordinates   1465397..1466749 (-) Length   450 a.a.
NCBI ID   WP_111710693.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460397..1471749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS07025 (NCTC6176_01425) rnc 1461217..1461909 (-) 693 WP_043053292.1 ribonuclease III -
  DQM56_RS07030 (NCTC6176_01426) - 1462168..1463682 (-) 1515 WP_014623184.1 helix-turn-helix domain-containing protein -
  DQM56_RS07035 (NCTC6176_01427) vicX 1464584..1465393 (-) 810 WP_021320992.1 MBL fold metallo-hydrolase Regulator
  DQM56_RS07040 (NCTC6176_01428) vicK 1465397..1466749 (-) 1353 WP_111710693.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM56_RS07045 (NCTC6176_01429) vicR 1466742..1467452 (-) 711 WP_012677635.1 response regulator YycF Regulator
  DQM56_RS07050 (NCTC6176_01430) - 1467638..1468669 (-) 1032 WP_111710942.1 DUF3114 domain-containing protein -
  DQM56_RS07055 (NCTC6176_01431) - 1468715..1469977 (-) 1263 WP_111710694.1 AMP-binding protein -
  DQM56_RS07060 (NCTC6176_01432) - 1469967..1471082 (-) 1116 WP_111710695.1 acetyl-CoA C-acyltransferase -
  DQM56_RS07065 (NCTC6176_01433) - 1471079..1471618 (-) 540 WP_111710696.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 51497.89 Da        Isoelectric Point: 5.5557

>NTDB_id=1138905 DQM56_RS07040 WP_111710693.1 1465397..1466749(-) (vicK) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MTKDIIGNLSAFELAILLLLVFVAFYFIHLAIRDYRNARIIRLMSHKIRDLINGRYTDTINEKADIELMELSEQLNDLSD
VFRLTHENLAQEKNRLASILAYMTDGVLATNRSGKIIMINETAQKQLNLNREQALEKNITDLLDSDSPYTYRELVSKTPI
VTLNRRNDTGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALK
EDIAPSFIKVSLDETNRMMRMISDLLNLSRIDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPIAS
IWLEIDNDKMTQVIENILNNAIKYSPDGGKIVVNMKTTDTQLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGTG
LGLAIAKEIIKQHRGFIWAKSDYGKGSTFTIVLPYEKDAAIYDEWEDDID

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=1138905 DQM56_RS07040 WP_111710693.1 1465397..1466749(-) (vicK) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGACTAAGGACATCATTGGAAACCTTTCTGCATTTGAGCTAGCCATACTCTTATTGCTTGTTTTTGTTGCTTTTTATTT
CATTCATTTAGCCATTCGTGATTATCGCAATGCTCGGATCATTCGTCTGATGAGCCACAAGATAAGAGATTTGATTAATG
GTCGCTATACGGACACGATCAATGAAAAGGCTGATATTGAATTGATGGAGCTGTCTGAGCAGCTCAATGACCTATCAGAT
GTTTTTCGTCTGACTCATGAAAACCTTGCTCAAGAAAAAAATCGTCTTGCTAGTATTTTGGCTTATATGACAGATGGGGT
CCTTGCGACCAATCGTTCCGGCAAGATTATCATGATTAATGAGACTGCTCAAAAGCAGCTCAATTTAAATCGCGAGCAGG
CCTTGGAAAAAAACATTACAGATTTATTAGACAGTGACTCCCCTTATACCTACCGAGAGCTGGTCTCAAAAACACCGATT
GTGACCTTAAACCGTCGTAATGATACAGGAGAATTTGTTTCCCTGCGGCTGCGCTTTGCGCTTAATAGGCGAGAAAGCGG
CTTTATTTCAGGTCTGGTTGTTGTGCTTCATGACACGACTGAGCAGGAAAAGGAAGAGCGCGAGCGCAGACTCTTTGTTT
CAAATGTTAGCCATGAGCTGCGGACACCTTTGACCTCTGTCAAGTCATACCTAGAGGCTCTAGATGAGGGCGCGCTAAAG
GAGGACATCGCTCCAAGCTTTATAAAGGTCTCACTAGATGAAACCAATCGCATGATGCGCATGATTTCAGATTTGCTCAA
CCTCTCAAGAATTGATAATCATGTGACACAGCTGTCTGTTGAAATGACCAACTTTACAGCCTTTATGACCTCTATCTTAA
ACCGCTTTGATTTGGTGAAAAATCAGCACACAAGCACAGGAAAATCCTATGAAATTGTCAGAGATTACCCTATTGCCTCT
ATTTGGCTAGAAATTGACAATGACAAAATGACGCAGGTTATCGAAAATATTTTAAACAATGCGATCAAATATTCACCCGA
TGGCGGAAAAATTGTCGTCAACATGAAAACAACAGATACCCAGCTAATCATTTCGATTTCTGATGAGGGCTTGGGCATTC
CAAAAAAGGACTTGCCTTTGATTTTTGACCGTTTTTACCGAGTGGATAAGGCTAGAAGTCGGGCGCAGGGGGGTACCGGC
TTAGGGTTGGCTATTGCCAAAGAAATTATCAAGCAGCACCGAGGCTTTATTTGGGCTAAGAGTGATTATGGCAAGGGCTC
AACCTTTACCATTGTGTTACCTTATGAAAAGGATGCTGCTATCTATGATGAATGGGAGGATGATATTGATTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

PAS fold (PAS)

(95-197)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

73.671

92

0.678
  micB Streptococcus pneumoniae Cp1015

66.824

94.444

0.631

Multiple sequence alignment