Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM56_RS07035 Genome accession   NZ_LS483368
Coordinates   1464584..1465393 (-) Length   269 a.a.
NCBI ID   WP_021320992.1    Uniprot ID   A0AAW3GKW3
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459584..1470393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS07025 (NCTC6176_01425) rnc 1461217..1461909 (-) 693 WP_043053292.1 ribonuclease III -
  DQM56_RS07030 (NCTC6176_01426) - 1462168..1463682 (-) 1515 WP_014623184.1 helix-turn-helix domain-containing protein -
  DQM56_RS07035 (NCTC6176_01427) vicX 1464584..1465393 (-) 810 WP_021320992.1 MBL fold metallo-hydrolase Regulator
  DQM56_RS07040 (NCTC6176_01428) vicK 1465397..1466749 (-) 1353 WP_111710693.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM56_RS07045 (NCTC6176_01429) vicR 1466742..1467452 (-) 711 WP_012677635.1 response regulator YycF Regulator
  DQM56_RS07050 (NCTC6176_01430) - 1467638..1468669 (-) 1032 WP_111710942.1 DUF3114 domain-containing protein -
  DQM56_RS07055 (NCTC6176_01431) - 1468715..1469977 (-) 1263 WP_111710694.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30011.07 Da        Isoelectric Point: 5.5344

>NTDB_id=1138904 DQM56_RS07035 WP_021320992.1 1464584..1465393(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MSEVGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRRPEDLDAILITHEHSDHIKGVGIMARKYNLD
VYANEKTWQMIDERHMIGNLDVTQKHVFERGKTMTFGDIDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRLAG
IIENADGYLIESNHDVEILRAGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGNKTKKIYLGHLSQENNIKELAHMTMVN
QLAMADLGVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1138904 DQM56_RS07035 WP_021320992.1 1464584..1465393(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGAGTGAGGTTGGCTTTAAATATAGTATTTTAGCATCAGGATCGACAGGTAACTGCTTTTACTTGGAAACGCCCAAGAA
GCGGTTGTTGATTGATGCAGGACTGACTGGAAAGAAAATCACCAGTCTCCTTGCTGAGATTGACAGAAGGCCTGAGGATT
TGGATGCTATCTTGATTACCCACGAGCATTCCGACCATATCAAGGGTGTTGGAATCATGGCTCGAAAATATAACCTAGAT
GTCTATGCCAATGAAAAGACTTGGCAGATGATTGATGAGCGTCATATGATTGGCAACCTAGACGTCACACAAAAGCATGT
CTTTGAAAGAGGTAAGACCATGACCTTTGGAGACATTGACATTGAGAGCTTTGGTGTTAGTCATGACGCTGTAGACCCAC
AGTTTTACCGCATTATGAAGGATAACAAGTCCTTTGTCATGCTGACGGATACAGGATATGTGAGCGACCGCTTGGCTGGG
ATCATTGAAAATGCTGACGGCTACTTGATTGAGTCAAATCACGATGTGGAGATATTGCGAGCCGGATCTTATCCTTGGAG
CCTCAAGCAGCGAATCTTATCTGACCTAGGGCATTTATCCAATGAAGATGGTGCCGGTGCCATGATTCGAAGCTTAGGCA
ATAAAACCAAGAAAATCTATCTCGGTCACCTAAGTCAGGAGAACAATATCAAAGAATTAGCCCACATGACAATGGTCAAT
CAGCTAGCAATGGCAGATTTAGGTGTTGGAACAGATTTTACTGTTCATGACACCTCACCAGATACCGCCTGTCCCTTGAC
AGACATCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.093

100

0.751

Multiple sequence alignment