Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DQM56_RS06940 Genome accession   NZ_LS483368
Coordinates   1442031..1442753 (-) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437031..1447753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS06915 (NCTC6176_01399) pstB 1437196..1437948 (-) 753 WP_012677665.1 phosphate ABC transporter ATP-binding protein PstB -
  DQM56_RS06920 (NCTC6176_01400) pstA 1437950..1438765 (-) 816 WP_111710681.1 phosphate ABC transporter permease PstA -
  DQM56_RS06925 (NCTC6176_01401) pstC 1438758..1439621 (-) 864 WP_012677663.1 phosphate ABC transporter permease subunit PstC -
  DQM56_RS06930 (NCTC6176_01402) - 1439691..1440563 (-) 873 WP_111710682.1 substrate-binding domain-containing protein -
  DQM56_RS06935 (NCTC6176_01403) pnpS 1440722..1442047 (-) 1326 WP_042670936.1 two-component system histidine kinase PnpS -
  DQM56_RS06940 (NCTC6176_01404) vicR 1442031..1442753 (-) 723 WP_012677660.1 response regulator transcription factor Regulator
  DQM56_RS10050 (NCTC6176_01405) - 1442925..1443080 (+) 156 WP_012515968.1 SPJ_0845 family protein -
  DQM56_RS06945 (NCTC6176_01406) - 1443121..1444023 (+) 903 WP_021320980.1 permease -
  DQM56_RS06950 (NCTC6176_01407) - 1444023..1444838 (+) 816 WP_042357070.1 TIGR03943 family putative permease subunit -
  DQM56_RS06955 (NCTC6176_01408) - 1445024..1446445 (-) 1422 WP_111690278.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=1138903 DQM56_RS06940 WP_012677660.1 1442031..1442753(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1138903 DQM56_RS06940 WP_012677660.1 1442031..1442753(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGTACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment