Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   DQM56_RS04865 Genome accession   NZ_LS483368
Coordinates   1013798..1015108 (+) Length   436 a.a.
NCBI ID   WP_111710546.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1008798..1020108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS04850 (NCTC6176_00981) phoU 1009288..1009941 (+) 654 WP_012678018.1 phosphate signaling complex protein PhoU -
  DQM56_RS04855 (NCTC6176_00982) - 1010176..1012713 (+) 2538 WP_014622811.1 M1 family metallopeptidase -
  DQM56_RS04860 (NCTC6176_00983) ciaR 1013131..1013805 (+) 675 WP_012515548.1 response regulator transcription factor Regulator
  DQM56_RS04865 (NCTC6176_00984) ciaH 1013798..1015108 (+) 1311 WP_111710546.1 sensor histidine kinase Regulator
  DQM56_RS04870 (NCTC6176_00985) - 1015493..1015927 (+) 435 WP_043026495.1 hypothetical protein -
  DQM56_RS10025 (NCTC6176_00986) - 1016009..1016185 (+) 177 WP_014622814.1 hypothetical protein -
  DQM56_RS04875 (NCTC6176_00987) - 1016201..1016608 (+) 408 WP_111710547.1 hypothetical protein -
  DQM56_RS04880 (NCTC6176_00988) - 1016618..1017811 (+) 1194 WP_111710548.1 hypothetical protein -
  DQM56_RS04885 (NCTC6176_00989) - 1017808..1018200 (+) 393 WP_111710549.1 hypothetical protein -
  DQM56_RS04890 (NCTC6176_00990) - 1018219..1018503 (+) 285 WP_111710550.1 hypothetical protein -
  DQM56_RS04895 (NCTC6176_00991) rpsT 1018702..1018935 (-) 234 WP_037578328.1 30S ribosomal protein S20 -
  DQM56_RS04900 (NCTC6176_00992) coaA 1019004..1019924 (-) 921 WP_111710551.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49606.28 Da        Isoelectric Point: 9.6507

>NTDB_id=1138897 DQM56_RS04865 WP_111710546.1 1013798..1015108(+) (ciaH) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MNKLKKGLLSDNYTHFFHFFAIFTGIFVVMTIIILQIMRFSVYSTVDSSLISVGQNASNYANRTMARISSFYFDAENNLI
QALPELEASKSLGSSTTNMDIILFSANGTILNSFDAFSNYQSFRLDKSQLNNIVTTQLMNFYGQKEKYHTLTVKVHIKNY
PAVAYMMAVVNVQQLDTANERYEQIIIMVMIVFWLISILASIYLAKWSRKPIMESYAKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILDNSEHIASSLDEVRNMRILTTNLLNLARRDDGIKPQLVDVDAAFFDTVFENYQLVAEESGKQFISAN
QINRPLKTDKALLKQLMTILFDNAIKYTDHNGMVEVKVRTTDKHLLISVIDNGPGIKDDDKKKIFDRFYRVDKARTRQKG
GFGLGLALAQQIVTSLKGTITVSDNKPTGAIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=1138897 DQM56_RS04865 WP_111710546.1 1013798..1015108(+) (ciaH) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGAATAAACTAAAAAAAGGATTATTGTCCGATAATTATACGCATTTTTTTCATTTCTTTGCTATTTTTACAGGCATTTT
TGTTGTCATGACCATCATTATTTTGCAAATCATGAGGTTTAGTGTTTATTCCACAGTAGACAGCAGTCTCATTTCGGTCG
GTCAAAATGCCAGCAACTATGCTAATAGGACCATGGCGAGAATATCTTCCTTTTATTTTGATGCAGAAAATAACCTTATT
CAGGCTCTTCCTGAACTGGAAGCGTCAAAATCACTTGGCTCCTCCACCACTAATATGGATATTATTTTATTTAGTGCTAA
TGGGACGATATTGAACTCCTTTGACGCTTTCTCTAATTACCAAAGCTTTCGTTTAGACAAAAGTCAGCTCAATAACATTG
TCACCACACAGCTGATGAATTTTTATGGGCAAAAGGAGAAATACCATACCCTAACCGTTAAGGTTCACATCAAAAACTAT
CCAGCAGTGGCTTATATGATGGCAGTGGTTAATGTTCAGCAACTGGATACTGCTAATGAGCGCTATGAACAGATTATTAT
CATGGTTATGATTGTCTTTTGGTTAATTTCGATTTTGGCCAGTATTTATTTGGCTAAGTGGAGCAGAAAGCCAATTATGG
AGAGCTATGCCAAGCAAAAAATGTTTGTAGAAAATGCCAGTCATGAGCTTAGGACTCCTTTAGCGGTGCTGCAAAATCGT
TTGGAATCACTGTTTAGAAAGCCTAACGAAACCATTTTAGACAATAGCGAGCATATTGCGTCAAGCCTAGATGAGGTTCG
TAATATGAGAATATTAACCACTAATTTGTTAAACCTAGCGAGACGTGATGATGGCATTAAGCCGCAGCTGGTTGATGTTG
ATGCAGCATTTTTTGACACTGTTTTTGAAAATTATCAATTAGTTGCAGAAGAGTCAGGTAAGCAGTTTATCTCAGCTAAT
CAGATCAATAGACCCTTAAAGACGGATAAGGCTTTACTCAAGCAGCTGATGACCATTTTGTTTGATAATGCGATCAAATA
CACTGACCATAACGGTATGGTTGAGGTCAAGGTTAGAACGACTGATAAGCATTTATTGATTTCTGTTATTGATAATGGCC
CAGGGATCAAGGACGATGATAAGAAAAAGATTTTTGATCGCTTTTACCGAGTGGATAAGGCAAGGACACGCCAAAAAGGA
GGGTTTGGACTCGGATTGGCCTTAGCGCAGCAGATCGTTACCTCATTAAAAGGAACGATTACCGTCAGTGATAATAAGCC
TACCGGCGCCATCTTTGAAGTAAAATTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.895

100

0.58
  ciaH Streptococcus pneumoniae Rx1

51.376

100

0.514
  ciaH Streptococcus pneumoniae D39

51.376

100

0.514
  ciaH Streptococcus pneumoniae R6

51.376

100

0.514
  ciaH Streptococcus pneumoniae TIGR4

51.376

100

0.514

Multiple sequence alignment