Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQM52_RS09130 | Genome accession | NZ_LS483367 |
| Coordinates | 1802294..1802785 (-) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1797294..1807785
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM52_RS09115 (NCTC5371_01863) | - | 1800027..1800971 (+) | 945 | WP_003059456.1 | magnesium transporter CorA family protein | - |
| DQM52_RS09120 (NCTC5371_01864) | - | 1801103..1801759 (+) | 657 | WP_003059462.1 | DUF1129 domain-containing protein | - |
| DQM52_RS09125 (NCTC5371_01865) | rpsR | 1801890..1802129 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQM52_RS09130 (NCTC5371_01866) | ssb | 1802294..1802785 (-) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM52_RS09135 (NCTC5371_01867) | rpsF | 1802807..1803097 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQM52_RS10955 (NCTC5371_01868) | - | 1804056..1804349 (-) | 294 | WP_015058032.1 | hypothetical protein | - |
| DQM52_RS09145 (NCTC5371_01869) | mutY | 1804515..1805681 (+) | 1167 | WP_003060012.1 | A/G-specific adenine glycosylase | - |
| DQM52_RS09150 (NCTC5371_01870) | trxA | 1805732..1806046 (-) | 315 | WP_003052691.1 | thioredoxin | - |
| DQM52_RS09155 (NCTC5371_01871) | - | 1806273..1807592 (+) | 1320 | WP_046159263.1 | FAD-containing oxidoreductase | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1138862 DQM52_RS09130 WP_002983122.1 1802294..1802785(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1138862 DQM52_RS09130 WP_002983122.1 1802294..1802785(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |