Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM60_RS09360 Genome accession   NZ_LS483366
Coordinates   2005008..2006978 (-) Length   656 a.a.
NCBI ID   WP_013991234.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000008..2011978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS09345 (NCTC7366_01893) - 2000613..2001503 (-) 891 WP_045771785.1 hypothetical protein -
  DQM60_RS09350 (NCTC7366_01894) - 2001558..2002865 (-) 1308 WP_014632564.1 GHKL domain-containing protein -
  DQM60_RS09355 (NCTC7366_01895) gltX 2003318..2004772 (-) 1455 WP_013991233.1 glutamate--tRNA ligase -
  DQM60_RS09360 (NCTC7366_01896) amiA 2005008..2006978 (-) 1971 WP_013991234.1 peptide ABC transporter substrate-binding protein Regulator
  DQM60_RS09365 (NCTC7366_01897) rplA 2007160..2007849 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  DQM60_RS09370 (NCTC7366_01898) rplK 2007949..2008374 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  DQM60_RS09375 (NCTC7366_01899) - 2008546..2008899 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  DQM60_RS09380 (NCTC7366_01900) - 2008994..2009491 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  DQM60_RS09385 (NCTC7366_01901) - 2009642..2010337 (-) 696 WP_111686672.1 TIGR00266 family protein -
  DQM60_RS09390 (NCTC7366_01902) radA 2010414..2011775 (-) 1362 WP_080562498.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72859.71 Da        Isoelectric Point: 5.0816

>NTDB_id=1138798 DQM60_RS09360 WP_013991234.1 2005008..2006978(-) (amiA) [Streptococcus salivarius strain NCTC7366]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGSDPATLDYLATNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
EDWSVSQDGLTYTYKIRKGLKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGDFLKSKGKDFGKSTDPTSILYNGPYLLKALTTKSSIEFTKNENYWDKD
HVYFDNIKLTYDDGSDQESLERNFTDGVYNLARLFPTSSNYSKVEKQYKDNIFYTQPGSAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQSLGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSSKITVNQVQSIKQSVESALGKDNVVLDIHQLSADDFNN
ITYSASNAAAEDWDLSVGVAWDPDYLDPSTYLDVLKTTSSENTKSFMGYDDPNSQAVQKVGLKEYDQLVEDASKETTDLK
VRYEKYAKAQAWLTDSALYLPTTTYNGAAAVISRIKPFSGAYAQAGDKGSSYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1138798 DQM60_RS09360 WP_013991234.1 2005008..2006978(-) (amiA) [Streptococcus salivarius strain NCTC7366]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTATGGTAGTGACCCTGCAACCTTGGACTATCTTGCTACAAACAAGAAAA
ATATGACTACAGCTGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATTTAAAACCTTCTGTCGCT
GAAGACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGACTTAAATGGTACACTTCAGATGG
CGAAGAATATGCCAATGTAACAGCTAAGGACTTTGTAACAGGTCTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACACTTAGTCAACCAGAACCTTACTGGAATTCAAAATTGACTTACTCTGTTAC
TTGGCCTGTTAATGGAGACTTCTTGAAATCTAAAGGTAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTTTATA
ACGGTCCATACCTTCTTAAGGCTTTGACAACGAAGTCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
CACGTCTATTTTGATAATATCAAATTGACTTATGATGATGGATCAGACCAAGAGTCTTTGGAACGCAACTTTACAGATGG
TGTATACAACTTAGCACGTCTATTCCCAACAAGTTCTAACTATTCCAAAGTTGAAAAACAGTACAAAGATAATATTTTCT
ATACGCAACCTGGATCAGCTGTAGAAGGTGTTGGTATTAATATTGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTCAATAAGGATTTCCGTCAATCATTAGGTTTTGCTATTGACCGTAC
AAATTACGCCGCACAACTTAATGGTAAGGAAGGTGGAAGTACTGCCGTCCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGACGGTCTTTATAACCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAGGAAGCCCTTCAAGCAGA
AGGAGTTCAGTTCCCAATTCATTTGGATGTCCCTGTTAATCAATCAAGTAAAATTACTGTGAATCAGGTACAATCAATTA
AACAGTCTGTTGAATCTGCTCTTGGAAAAGACAATGTTGTGCTTGATATTCACCAATTGTCGGCTGATGATTTTAACAAC
ATCACTTACTCTGCATCAAATGCAGCTGCAGAAGATTGGGACTTGTCAGTGGGTGTGGCTTGGGACCCTGATTACCTTGA
CCCTTCAACTTATCTTGATGTCTTGAAAACGACAAGTAGCGAAAATACTAAATCCTTCATGGGTTATGACGATCCAAATA
GTCAAGCAGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGAAGATGCCTCTAAGGAAACAACAGACTTGAAG
GTTCGTTATGAAAAATATGCAAAAGCTCAAGCATGGTTGACAGATAGTGCCCTCTATCTTCCAACAACTACTTATAACGG
TGCAGCTGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCTGGTGATAAAGGTTCTTCATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAAAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.665

100

0.697
  amiA3 Streptococcus thermophilus LMD-9

68.95

100

0.691
  amiA3 Streptococcus thermophilus LMG 18311

68.189

100

0.683

Multiple sequence alignment