Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM60_RS09390 Genome accession   NZ_LS483366
Coordinates   2010414..2011775 (-) Length   453 a.a.
NCBI ID   WP_080562498.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2005414..2016775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS09365 (NCTC7366_01897) rplA 2007160..2007849 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  DQM60_RS09370 (NCTC7366_01898) rplK 2007949..2008374 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  DQM60_RS09375 (NCTC7366_01899) - 2008546..2008899 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  DQM60_RS09380 (NCTC7366_01900) - 2008994..2009491 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  DQM60_RS09385 (NCTC7366_01901) - 2009642..2010337 (-) 696 WP_111686672.1 TIGR00266 family protein -
  DQM60_RS09390 (NCTC7366_01902) radA 2010414..2011775 (-) 1362 WP_080562498.1 DNA repair protein RadA Machinery gene
  DQM60_RS09395 (NCTC7366_01903) - 2011772..2012239 (-) 468 WP_002886984.1 isochorismatase family protein -
  DQM60_RS09400 (NCTC7366_01904) - 2012249..2012695 (-) 447 WP_111686673.1 dUTP diphosphatase -
  DQM60_RS09405 (NCTC7366_01905) - 2012903..2013505 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  DQM60_RS09410 (NCTC7366_01906) - 2013524..2014774 (+) 1251 WP_002885631.1 NAD(P)H-dependent oxidoreductase -
  DQM60_RS09415 (NCTC7366_01907) - 2014891..2015682 (+) 792 WP_014635096.1 formate/nitrite transporter family protein -
  DQM60_RS09420 (NCTC7366_01908) - 2015691..2016257 (+) 567 WP_002886989.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49477.89 Da        Isoelectric Point: 6.9531

>NTDB_id=1138799 DQM60_RS09390 WP_080562498.1 2010414..2011775(-) (radA) [Streptococcus salivarius strain NCTC7366]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIRVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1138799 DQM60_RS09390 WP_080562498.1 2010414..2011775(-) (radA) [Streptococcus salivarius strain NCTC7366]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGTCCCAACTG
TTCTTCCTGGTCCTCTTTTGAGGAGGAAGTTGAGGTGCAGGAGGTGAAAAATGCTCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCAGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCTACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGTTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGTGAACGT
CATCACACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACTAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTTATCATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCAGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTCGCTGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTGACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGCTCCCAAAAATTCTCT
ACATGGTATGAAAATTCCAGAAGGTATCCGGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment