Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   Q426_RS00305 Genome accession   NZ_CP006770
Coordinates   67308..69284 (+) Length   658 a.a.
NCBI ID   WP_014623464.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus CY     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 62308..74284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q426_RS00290 (Q426_00315) - 62939..64120 (-) 1182 WP_038673980.1 D-alanyl-D-alanine carboxypeptidase family protein -
  Q426_RS00295 (Q426_00320) pbp3 64204..65439 (-) 1236 WP_014623466.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  Q426_RS00300 (Q426_00325) pbp3 65762..67000 (-) 1239 WP_014623465.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  Q426_RS00305 (Q426_00330) amiA3 67308..69284 (+) 1977 WP_014623464.1 peptide ABC transporter substrate-binding protein Regulator
  Q426_RS00310 (Q426_00335) amiC 69348..70847 (+) 1500 WP_014623463.1 ABC transporter permease Regulator
  Q426_RS00315 (Q426_00340) amiD 70847..71773 (+) 927 WP_014623462.1 oligopeptide ABC transporter permease OppC Regulator
  Q426_RS00320 (Q426_00345) amiE 71782..72852 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  Q426_RS00325 (Q426_00350) amiF 72845..73768 (+) 924 WP_014623461.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72786.21 Da        Isoelectric Point: 5.4757

>NTDB_id=113876 Q426_RS00305 WP_014623464.1 67308..69284(+) (amiA3) [Streptococcus equi subsp. zooepidemicus CY]
MKKSKWLTTLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNEITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWN
AKNVHLDGVQLTYYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKSLRSTLVPPTFVQIGNKNFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQRDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPALANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKVVPFSGAFAWAGTKGDTYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=113876 Q426_RS00305 WP_014623464.1 67308..69284(+) (amiA3) [Streptococcus equi subsp. zooepidemicus CY]
ATGAAGAAAAGTAAATGGTTGACAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGAGATAACAACGAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCACTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATCACAGCTTTGACAAGTAAATCCTCTATTGAGCTTGTCAAAAACGAAAATTATTGGAAT
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACTTATTATGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGTGCTTACTCTGCAGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGAGATAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCATACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTTCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAATCGCTTCGTAGCACACTTGTGCCACCGACAT
TTGTGCAGATCGGCAACAAAAACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAGAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGTGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAGAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGATTA
TGTCGACCCATCGTCATATCTTGATATTTTCAACCCAGCGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGCAAGATTACTGAT
GATCTCAACGCCCGCTACACGCTCTATGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCGACTATTTC
ACTTGGTGGAACACCACGTGTAACTAAAGTGGTACCGTTTTCGGGCGCCTTTGCTTGGGCTGGAACTAAGGGTGATACCT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

55.909

100

0.561
  amiA3 Streptococcus thermophilus LMD-9

55.758

100

0.559
  amiA Streptococcus salivarius strain HSISS4

55.539

100

0.556

Multiple sequence alignment