Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DQM53_RS03520 Genome accession   NZ_LS483361
Coordinates   646747..647454 (+) Length   235 a.a.
NCBI ID   WP_111715731.1    Uniprot ID   A0A9X8SYK1
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 641747..652454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS03500 (NCTC6179_00714) - 642456..643880 (+) 1425 WP_111715726.1 glycoside hydrolase family 1 protein -
  DQM53_RS03505 (NCTC6179_00715) - 643980..644795 (-) 816 WP_111715728.1 TIGR03943 family protein -
  DQM53_RS03510 (NCTC6179_00716) - 644795..645697 (-) 903 WP_003049962.1 permease -
  DQM53_RS11215 (NCTC6179_00717) - 645850..645999 (-) 150 WP_164714918.1 SPJ_0845 family protein -
  DQM53_RS03515 - 646174..646660 (+) 487 Protein_636 cupin domain-containing protein -
  DQM53_RS03520 (NCTC6179_00720) vicR 646747..647454 (+) 708 WP_111715731.1 response regulator transcription factor Regulator
  DQM53_RS03525 (NCTC6179_00721) - 647455..648783 (+) 1329 WP_111715733.1 ATP-binding protein -
  DQM53_RS03530 (NCTC6179_00722) - 648950..649825 (+) 876 WP_111715735.1 substrate-binding domain-containing protein -
  DQM53_RS03535 (NCTC6179_00724) pstC 649943..650806 (+) 864 WP_003060511.1 phosphate ABC transporter permease subunit PstC -
  DQM53_RS03540 (NCTC6179_00725) pstA 650799..651614 (+) 816 WP_111715738.1 phosphate ABC transporter permease PstA -
  DQM53_RS03545 (NCTC6179_00726) pstB 651616..652368 (+) 753 WP_111715740.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27519.75 Da        Isoelectric Point: 5.4461

>NTDB_id=1138521 DQM53_RS03520 WP_111715731.1 646747..647454(+) (vicR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MTKQILLVDDEEHILRLLDYHLVKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIEVCKRLRAKGIKTPIMMV
SAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTSKEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLS
LTPKEFELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKEL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1138521 DQM53_RS03520 WP_111715731.1 646747..647454(+) (vicR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGACAAAACAAATCTTATTAGTGGATGATGAAGAACACATTTTGAGGCTACTGGATTATCATCTCGTTAAAGAAGGGTT
TTCCACACAATTGGTAACAGATGGCCGAAAAGCATTGACATTGGCAGAAACAGAGCCTTTTGACTTTATCCTACTGGATA
TTATGTTGCCTCAGTTAGACGGCATAGAAGTGTGTAAGCGACTGAGAGCTAAAGGAATAAAAACTCCGATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGATAAGGTTTTGGCCTTAGAATTAGGAGCTGATGATTACCTGACAAAACCTTTTAGCCC
CAGGGAATTAGTGGCGCGTGTCAAGGCTATTTTACGTCGAACCAGTAAAGAGCAGCAAGAAGATGACACAGATGATTTCA
GGGATGATTATCGGGTATTTGGGGCCCTGACCGTCTATCCAGACCGGCATGAGGTGTATAAGGCAGATCATTTATTGAGC
CTTACCCCAAAGGAATTTGAACTCTTGCTCTATCTTATGAAACATCCCAACATGACCTTAACTAGGGAACGTTTACTCGA
ACGGATTTGGGGATATGATTTTGGACAAGAAACCCGTTTAGTGGATGTTCATATTGGCAAATTGAGAGATAAGATAGAGG
ATAACCCTAAAGACCCTCAATTTATTCAAACGATTAGAGGCTATGGGTATAAGTTTAAGGAGTTATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

48.718

99.574

0.485
  micA Streptococcus pneumoniae Cp1015

47.619

98.298

0.468
  covR Lactococcus lactis subsp. lactis strain DGCC12653

40.851

100

0.409
  covR Streptococcus salivarius strain HSISS4

40.084

100

0.404

Multiple sequence alignment