Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQM47_RS01810 | Genome accession | NZ_LS483360 |
| Coordinates | 335395..335886 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC10876 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 330395..340886
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM47_RS01780 (NCTC10876_00351) | - | 331584..332084 (+) | 501 | WP_021299043.1 | phosphatase PAP2 family protein | - |
| DQM47_RS01785 (NCTC10876_00352) | trxA | 332147..332479 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| DQM47_RS01790 (NCTC10876_00353) | - | 332531..333118 (-) | 588 | Protein_292 | helix-turn-helix domain-containing protein | - |
| DQM47_RS01795 (NCTC10876_00354) | mutY | 333295..334449 (-) | 1155 | WP_023610560.1 | A/G-specific adenine glycosylase | - |
| DQM47_RS01800 (NCTC10876_00355) | - | 334617..334910 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| DQM47_RS01805 (NCTC10876_00356) | rpsF | 335083..335373 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQM47_RS01810 (NCTC10876_00357) | ssb | 335395..335886 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM47_RS01815 (NCTC10876_00358) | rpsR | 336051..336290 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQM47_RS01820 (NCTC10876_00359) | - | 336423..337079 (-) | 657 | WP_023610581.1 | DUF1129 domain-containing protein | - |
| DQM47_RS01825 (NCTC10876_00360) | - | 337211..338155 (-) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1138457 DQM47_RS01810 WP_002983122.1 335395..335886(+) (ssb) [Streptococcus pyogenes strain NCTC10876]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1138457 DQM47_RS01810 WP_002983122.1 335395..335886(+) (ssb) [Streptococcus pyogenes strain NCTC10876]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAGGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTTTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAGGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |