Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DQM70_RS04725 | Genome accession | NZ_LS483358 |
| Coordinates | 1031191..1031637 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain NCTC11384 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1026191..1036637
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM70_RS04700 (NCTC11384_00961) | yacG | 1027098..1027286 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| DQM70_RS04705 (NCTC11384_00962) | coaE | 1027268..1027906 (-) | 639 | WP_005601202.1 | dephospho-CoA kinase | - |
| DQM70_RS04710 (NCTC11384_00963) | - | 1027928..1028566 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| DQM70_RS04715 (NCTC11384_00964) | pilC | 1028593..1029795 (-) | 1203 | WP_005601207.1 | type II secretion system F family protein | Machinery gene |
| DQM70_RS04720 (NCTC11384_00965) | pilB | 1029779..1031173 (-) | 1395 | WP_005597396.1 | GspE/PulE family protein | Machinery gene |
| DQM70_RS04725 (NCTC11384_00966) | pilA | 1031191..1031637 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DQM70_RS04730 (NCTC11384_00967) | radA | 1031819..1033198 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| DQM70_RS04735 (NCTC11384_00968) | - | 1033242..1033475 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| DQM70_RS04740 (NCTC11384_00969) | folA | 1033602..1034090 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| DQM70_RS04745 (NCTC11384_00970) | proB | 1034177..1035268 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| DQM70_RS04750 (NCTC11384_00971) | - | 1035281..1036057 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=1138365 DQM70_RS04725 WP_005597397.1 1031191..1031637(-) (pilA) [Actinobacillus pleuropneumoniae strain NCTC11384]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=1138365 DQM70_RS04725 WP_005597397.1 1031191..1031637(-) (pilA) [Actinobacillus pleuropneumoniae strain NCTC11384]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |