Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQL13_RS06970 Genome accession   NZ_LS483354
Coordinates   1472959..1473768 (-) Length   269 a.a.
NCBI ID   WP_012515992.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11606     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1467959..1478768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL13_RS06955 (NCTC11606_01392) rnc 1469614..1470306 (-) 693 WP_037581642.1 ribonuclease III -
  DQL13_RS06960 (NCTC11606_01393) - 1470565..1472076 (-) 1512 WP_282731060.1 helix-turn-helix domain-containing protein -
  DQL13_RS06970 (NCTC11606_01394) vicX 1472959..1473768 (-) 810 WP_012515992.1 MBL fold metallo-hydrolase Regulator
  DQL13_RS06975 (NCTC11606_01395) vicK 1473772..1475124 (-) 1353 WP_014623188.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQL13_RS06980 (NCTC11606_01396) vicR 1475117..1475827 (-) 711 WP_012515994.1 response regulator YycF Regulator
  DQL13_RS06985 (NCTC11606_01397) - 1476024..1477043 (-) 1020 WP_012515995.1 DUF3114 domain-containing protein -
  DQL13_RS06990 (NCTC11606_01398) - 1477089..1478351 (-) 1263 WP_012515996.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29951.03 Da        Isoelectric Point: 5.7427

>NTDB_id=1138165 DQL13_RS06970 WP_012515992.1 1472959..1473768(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MSEVGFKYSILASGSTGNCFYLETPKRRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGIMARKYNLD
VYANEKTWQMIDERHMIGNLDVAQKHVFERGKTMTFGDIDIESFGVSHDAVDPQFYRIMKDNRSFVMLTDTGYVSDRLAG
IIANADGYLIESNHDVEILRAGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGNKTKKIYLGHLSQENNIKELAHMTMVN
QLAMADLGVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1138165 DQL13_RS06970 WP_012515992.1 1472959..1473768(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGAGTGAGGTTGGCTTTAAATATAGTATTTTAGCATCAGGGTCGACAGGTAACTGCTTTTACTTGGAAACGCCCAAGAG
GCGATTGTTGATTGATGCAGGGCTGACTGGCAAGAAAATCACCAGTCTCCTTGCTGAGATTGATAGAAAGCCTGAGGATT
TAGATGCTATCTTGATTACCCACGAGCATTCCGACCATATCAAGGGCGTTGGAATCATGGCTCGAAAATATAACCTAGAC
GTCTATGCCAATGAAAAGACTTGGCAGATGATTGATGAGCGTCATATGATTGGTAACCTAGACGTAGCACAAAAGCATGT
CTTTGAAAGAGGTAAGACCATGACCTTTGGAGACATTGACATTGAGAGCTTTGGTGTTAGTCATGACGCTGTAGACCCAC
AGTTTTACCGCATTATGAAGGACAACAGGTCCTTTGTCATGCTGACAGATACAGGATATGTGAGTGACCGCTTGGCCGGA
ATCATTGCAAATGCTGATGGCTACTTGATTGAGTCAAATCACGATGTAGAGATATTGCGAGCCGGCTCATACCCTTGGAG
CCTAAAGCAGCGAATCTTATCTGATCTAGGGCATTTATCCAATGAAGATGGTGCTGGTGCTATGATTCGAAGCTTGGGCA
ACAAAACAAAGAAAATCTACCTCGGTCACCTAAGCCAGGAGAACAATATCAAAGAATTAGCCCACATGACAATGGTCAAT
CAGCTAGCAATGGCAGATTTAGGTGTTGGAACAGATTTTACTGTTCATGATACCTCACCAGATACCGCCTGCCCCTTGAC
AGACATCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

74.349

100

0.743

Multiple sequence alignment