Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL13_RS02060 Genome accession   NZ_LS483354
Coordinates   402790..403278 (+) Length   162 a.a.
NCBI ID   WP_012514998.1    Uniprot ID   A0AAW3GP39
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11606     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 403877..405219 402790..403278 flank 599


Gene organization within MGE regions


Location: 402790..405219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL13_RS02060 (NCTC11606_00406) ssbA 402790..403278 (+) 489 WP_012514998.1 single-stranded DNA-binding protein Machinery gene
  DQL13_RS02065 (NCTC11606_00407) rpsR 403437..403676 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQL13_RS02070 (NCTC11606_00409) - 403877..405219 (+) 1343 WP_165626751.1 IS3 family transposase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17765.60 Da        Isoelectric Point: 4.9008

>NTDB_id=1138145 DQL13_RS02060 WP_012514998.1 402790..403278(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPAANSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1138145 DQL13_RS02060 WP_012514998.1 402790..403278(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTTAATGGCTCACCGGCAGCCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.322

100

0.605
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.136

0.377
  ssb Glaesserella parasuis strain SC1401

32.065

100

0.364

Multiple sequence alignment