Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQL39_RS00805 | Genome accession | NZ_LS483353 |
| Coordinates | 139262..139753 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC4001 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 134262..144753
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL39_RS00775 (NCTC4001_00154) | - | 135462..135962 (+) | 501 | WP_011018191.1 | phosphatase PAP2 family protein | - |
| DQL39_RS00780 (NCTC4001_00155) | trxA | 136025..136357 (+) | 333 | WP_256363924.1 | thioredoxin | - |
| DQL39_RS00785 (NCTC4001_00156) | - | 136409..136995 (-) | 587 | Protein_128 | helix-turn-helix domain-containing protein | - |
| DQL39_RS00790 (NCTC4001_00157) | mutY | 137172..138326 (-) | 1155 | WP_162472513.1 | A/G-specific adenine glycosylase | - |
| DQL39_RS09110 (NCTC4001_00158) | - | 138494..138777 (+) | 284 | Protein_130 | hypothetical protein | - |
| DQL39_RS00800 (NCTC4001_00159) | rpsF | 138950..139240 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQL39_RS00805 (NCTC4001_00160) | ssb | 139262..139753 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL39_RS00810 (NCTC4001_00161) | rpsR | 139918..140157 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQL39_RS00815 (NCTC4001_00162) | - | 140290..140946 (-) | 657 | WP_002983144.1 | DUF1129 domain-containing protein | - |
| DQL39_RS00820 (NCTC4001_00163) | - | 141079..142023 (-) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1138079 DQL39_RS00805 WP_002983122.1 139262..139753(+) (ssb) [Streptococcus pyogenes strain NCTC4001]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1138079 DQL39_RS00805 WP_002983122.1 139262..139753(+) (ssb) [Streptococcus pyogenes strain NCTC4001]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |