Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQM42_RS08280 Genome accession   NZ_LS483351
Coordinates   1559351..1559842 (-) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus pyogenes strain NCTC8195     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1554351..1564842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM42_RS08265 (NCTC8195_01658) - 1557082..1558026 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  DQM42_RS08270 (NCTC8195_01659) - 1558158..1558814 (+) 657 WP_002983144.1 DUF1129 domain-containing protein -
  DQM42_RS08275 (NCTC8195_01660) rpsR 1558947..1559186 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQM42_RS08280 (NCTC8195_01661) ssb 1559351..1559842 (-) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  DQM42_RS08285 (NCTC8195_01662) rpsF 1559864..1560154 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  DQM42_RS08290 (NCTC8195_01663) - 1560327..1560620 (-) 294 WP_002983113.1 hypothetical protein -
  DQM42_RS08295 (NCTC8195_01664) mutY 1560788..1561942 (+) 1155 WP_002983107.1 A/G-specific adenine glycosylase -
  DQM42_RS08300 (NCTC8195_01665) - 1562119..1562706 (+) 588 WP_002983102.1 helix-turn-helix domain-containing protein -
  DQM42_RS08305 (NCTC8195_01666) trxA 1562758..1563090 (-) 333 WP_001932060.1 thioredoxin -
  DQM42_RS08310 (NCTC8195_01667) - 1563153..1563653 (-) 501 WP_032467312.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=1138008 DQM42_RS08280 WP_002983122.1 1559351..1559842(-) (ssb) [Streptococcus pyogenes strain NCTC8195]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1138008 DQM42_RS08280 WP_002983122.1 1559351..1559842(-) (ssb) [Streptococcus pyogenes strain NCTC8195]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment