Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM92_RS10585 Genome accession   NZ_LS483350
Coordinates   2045887..2046357 (-) Length   156 a.a.
NCBI ID   WP_000934770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC11940     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2040887..2051357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM92_RS10525 (NCTC11940_01953) - 2041163..2041363 (-) 201 WP_000265039.1 DUF1514 family protein -
  DQM92_RS10530 (NCTC11940_01954) rinB 2041363..2041512 (-) 150 WP_000595265.1 transcriptional activator RinB -
  DQM92_RS10535 (NCTC11940_01955) - 2041509..2041715 (-) 207 WP_000195820.1 DUF1381 domain-containing protein -
  DQM92_RS10540 (NCTC11940_01956) - 2041752..2042288 (-) 537 WP_001066444.1 dUTPase -
  DQM92_RS10545 (NCTC11940_01957) - 2042281..2042691 (-) 411 WP_000197967.1 hypothetical protein -
  DQM92_RS10550 (NCTC11940_01958) - 2042688..2043197 (-) 510 WP_001105598.1 hypothetical protein -
  DQM92_RS10555 (NCTC11940_01959) - 2043194..2043643 (-) 450 WP_000982711.1 YopX family protein -
  DQM92_RS10560 (NCTC11940_01960) - 2043708..2043950 (-) 243 WP_000131366.1 SAV1978 family virulence-associated passenger protein -
  DQM92_RS10565 (NCTC11940_01961) - 2043954..2044322 (-) 369 WP_000101274.1 SA1788 family PVL leukocidin-associated protein -
  DQM92_RS10570 (NCTC11940_01962) - 2044335..2044739 (-) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  DQM92_RS10575 (NCTC11940_01963) - 2044748..2044966 (-) 219 WP_000338528.1 hypothetical protein -
  DQM92_RS10580 (NCTC11940_01964) - 2044973..2045857 (-) 885 WP_000148301.1 DnaD domain protein -
  DQM92_RS10585 (NCTC11940_01965) ssbA 2045887..2046357 (-) 471 WP_000934770.1 single-stranded DNA-binding protein Machinery gene
  DQM92_RS10590 (NCTC11940_01966) - 2046358..2046975 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  DQM92_RS10595 (NCTC11940_01967) - 2047056..2047976 (-) 921 WP_000138481.1 recombinase RecT -
  DQM92_RS10600 (NCTC11940_01968) - 2047978..2049921 (-) 1944 WP_000700565.1 AAA family ATPase -
  DQM92_RS10605 (NCTC11940_01969) - 2049930..2050193 (-) 264 WP_001205732.1 hypothetical protein -
  DQM92_RS10610 (NCTC11940_01970) - 2050202..2050462 (-) 261 WP_000291489.1 DUF1108 family protein -
  DQM92_RS10615 (NCTC11940_01971) - 2050555..2050716 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  DQM92_RS10620 (NCTC11940_01972) - 2050713..2051033 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=1137956 DQM92_RS10585 WP_000934770.1 2045887..2046357(-) (ssbA) [Staphylococcus aureus strain NCTC11940]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1137956 DQM92_RS10585 WP_000934770.1 2045887..2046357(-) (ssbA) [Staphylococcus aureus strain NCTC11940]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment