Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DQM92_RS01620 | Genome accession | NZ_LS483350 |
| Coordinates | 352255..352758 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934798.1 | Uniprot ID | A0A0Z0SL74 |
| Organism | Staphylococcus aureus strain NCTC11940 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 335950..423650 | 352255..352758 | within | 0 |
Gene organization within MGE regions
Location: 335950..423650
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM92_RS01540 (NCTC11940_00288) | - | 336506..337135 (+) | 630 | WP_000677714.1 | ABC-2 transporter permease | - |
| DQM92_RS01545 (NCTC11940_00289) | - | 337502..338635 (-) | 1134 | WP_000245685.1 | low temperature requirement protein A | - |
| DQM92_RS01550 (NCTC11940_00290) | - | 339174..340355 (+) | 1182 | WP_000199070.1 | acetyl-CoA C-acetyltransferase | - |
| DQM92_RS01555 (NCTC11940_00291) | - | 340438..341190 (-) | 753 | WP_000195907.1 | cyclase family protein | - |
| DQM92_RS01560 (NCTC11940_00292) | metE | 341233..343461 (-) | 2229 | WP_000207614.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| DQM92_RS01565 (NCTC11940_00293) | - | 343458..345299 (-) | 1842 | WP_000077318.1 | bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase | - |
| DQM92_RS01570 (NCTC11940_00294) | metC | 345268..346428 (-) | 1161 | WP_000175846.1 | cystathionine beta-lyase MetC | - |
| DQM92_RS01575 (NCTC11940_00295) | - | 346425..347528 (-) | 1104 | WP_000655692.1 | PLP-dependent transferase | - |
| DQM92_RS01585 (NCTC11940_00297) | - | 348192..349037 (+) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
| DQM92_RS01590 (NCTC11940_00298) | - | 349194..350075 (+) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| DQM92_RS01595 (NCTC11940_00299) | - | 350105..350308 (+) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| DQM92_RS01600 (NCTC11940_00300) | ychF | 350320..351417 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| DQM92_RS01605 (NCTC11940_00301) | - | 351503..351694 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| DQM92_RS01615 (NCTC11940_00302) | rpsF | 351938..352234 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| DQM92_RS01620 (NCTC11940_00303) | ssbA | 352255..352758 (+) | 504 | WP_000934798.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM92_RS01625 (NCTC11940_00304) | rpsR | 352810..353052 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| DQM92_RS01630 (NCTC11940_00305) | - | 353318..354256 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| DQM92_RS14755 | - | 354295..354996 (-) | 702 | Protein_310 | tyrosine-type recombinase/integrase | - |
| DQM92_RS01645 (NCTC11940_00307) | selX | 355202..355813 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| DQM92_RS01650 (NCTC11940_00308) | - | 356182..356550 (+) | 369 | WP_000849177.1 | YxeA family protein | - |
| DQM92_RS01655 (NCTC11940_00309) | - | 356731..357303 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| DQM92_RS01660 (NCTC11940_00310) | - | 357441..357704 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| DQM92_RS01665 (NCTC11940_00311) | - | 358004..358255 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| DQM92_RS01670 | - | 358294..358503 (-) | 210 | WP_000211676.1 | hypothetical protein | - |
| DQM92_RS01675 (NCTC11940_00312) | - | 358681..359262 (+) | 582 | WP_000158374.1 | histidine phosphatase family protein | - |
| DQM92_RS01680 (NCTC11940_00313) | - | 359328..359711 (-) | 384 | WP_000868248.1 | hypothetical protein | - |
| DQM92_RS01685 (NCTC11940_00314) | - | 359966..360592 (-) | 627 | WP_000746687.1 | NDxxF motif lipoprotein | - |
| DQM92_RS01690 (NCTC11940_00315) | - | 360665..360901 (-) | 237 | Protein_320 | hypothetical protein | - |
| DQM92_RS01695 (NCTC11940_00316) | ahpF | 361037..362560 (-) | 1524 | WP_000930486.1 | alkyl hydroperoxide reductase subunit F | - |
| DQM92_RS01700 (NCTC11940_00317) | ahpC | 362576..363145 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| DQM92_RS01705 (NCTC11940_00318) | nfsA | 363637..364392 (+) | 756 | WP_001289311.1 | oxygen-insensitive NADPH nitroreductase | - |
| DQM92_RS01710 (NCTC11940_00319) | - | 364473..365861 (-) | 1389 | WP_000991007.1 | L-cystine transporter | - |
| DQM92_RS01715 | - | 365946..366047 (+) | 102 | WP_001789518.1 | hypothetical protein | - |
| DQM92_RS01725 (NCTC11940_00320) | - | 366838..367794 (-) | 957 | WP_000956132.1 | hypothetical protein | - |
| DQM92_RS01730 (NCTC11940_00321) | - | 367912..368574 (-) | 663 | WP_000394698.1 | hypothetical protein | - |
| DQM92_RS01735 (NCTC11940_00322) | - | 368717..369124 (-) | 408 | WP_000763768.1 | general stress protein | - |
| DQM92_RS01740 (NCTC11940_00324) | xpt | 369637..370215 (+) | 579 | WP_000421410.1 | xanthine phosphoribosyltransferase | - |
| DQM92_RS01745 (NCTC11940_00325) | pbuX | 370215..371483 (+) | 1269 | WP_000793009.1 | xanthine permease PbuX | - |
| DQM92_RS01750 (NCTC11940_00326) | guaB | 371521..372987 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| DQM92_RS01755 (NCTC11940_00327) | guaA | 373012..374553 (+) | 1542 | WP_000424966.1 | glutamine-hydrolyzing GMP synthase | - |
| DQM92_RS01760 (NCTC11940_00328) | - | 374621..375814 (-) | 1194 | WP_000237796.1 | site-specific integrase | - |
| DQM92_RS01765 (NCTC11940_00329) | - | 375841..376041 (-) | 201 | WP_000633907.1 | DUF3173 family protein | - |
| DQM92_RS01775 (NCTC11940_00330) | - | 376539..376769 (-) | 231 | WP_000845143.1 | helix-turn-helix domain-containing protein | - |
| DQM92_RS01780 (NCTC11940_00331) | - | 376766..377188 (-) | 423 | WP_000804879.1 | RNA polymerase sigma factor | - |
| DQM92_RS01790 (NCTC11940_00332) | - | 377719..378072 (+) | 354 | WP_001227350.1 | helix-turn-helix domain-containing protein | - |
| DQM92_RS01795 | - | 378130..378315 (-) | 186 | WP_413926387.1 | cysteine-rich KTR domain-containing protein | - |
| DQM92_RS01800 (NCTC11940_00333) | tet(M) | 378416..380335 (-) | 1920 | WP_000691737.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| DQM92_RS01805 | - | 380351..380467 (-) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| DQM92_RS01815 (NCTC11940_00334) | - | 380712..381641 (-) | 930 | WP_000584387.1 | conjugal transfer protein | - |
| DQM92_RS01820 (NCTC11940_00335) | - | 381658..382680 (-) | 1023 | WP_000768373.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| DQM92_RS01825 (NCTC11940_00336) | - | 382677..384704 (-) | 2028 | WP_000192392.1 | CD3337/EF1877 family mobilome membrane protein | - |
| DQM92_RS01830 (NCTC11940_00337) | - | 384701..387154 (-) | 2454 | WP_000331168.1 | ATP-binding protein | - |
| DQM92_RS01835 (NCTC11940_00338) | - | 387138..387533 (-) | 396 | WP_000723887.1 | conjugal transfer protein | - |
| DQM92_RS01840 (NCTC11940_00339) | - | 387605..388234 (-) | 630 | WP_000273483.1 | DUF6037 family protein | - |
| DQM92_RS01845 (NCTC11940_00340) | istB | 388263..388991 (-) | 729 | WP_001071399.1 | IS21-like element helper ATPase IstB | - |
| DQM92_RS01850 (NCTC11940_00341) | istA | 388991..390418 (-) | 1428 | WP_000957075.1 | IS21 family transposase | - |
| DQM92_RS14915 (NCTC11940_00342) | - | 390502..390630 (-) | 129 | WP_000248478.1 | hypothetical protein | - |
| DQM92_RS01855 (NCTC11940_00343) | - | 390686..391186 (-) | 501 | WP_000425404.1 | antirestriction protein ArdA | - |
| DQM92_RS01860 (NCTC11940_00344) | - | 391247..392026 (-) | 780 | WP_000675717.1 | abortive infection family protein | - |
| DQM92_RS01865 (NCTC11940_00345) | - | 392068..392289 (-) | 222 | WP_001009054.1 | hypothetical protein | - |
| DQM92_RS01870 (NCTC11940_00346) | - | 392286..392576 (-) | 291 | WP_000055376.1 | hypothetical protein | - |
| DQM92_RS01875 (NCTC11940_00347) | mobT | 392573..393757 (-) | 1185 | WP_000426690.1 | MobT family relaxase | - |
| DQM92_RS01880 (NCTC11940_00348) | - | 393939..395342 (-) | 1404 | WP_001130246.1 | FtsK/SpoIIIE domain-containing protein | - |
| DQM92_RS01885 (NCTC11940_00349) | - | 395364..396137 (-) | 774 | WP_000185761.1 | hypothetical protein | - |
| DQM92_RS01890 (NCTC11940_00350) | - | 396147..396524 (-) | 378 | WP_001234191.1 | YdcP family protein | - |
| DQM92_RS01895 (NCTC11940_00351) | - | 396545..396859 (-) | 315 | WP_000421279.1 | YdcP family protein | - |
| DQM92_RS01900 (NCTC11940_00352) | - | 397059..398852 (-) | 1794 | WP_000181735.1 | ATP-dependent helicase | - |
| DQM92_RS01905 (NCTC11940_00353) | - | 398849..401038 (-) | 2190 | WP_000470931.1 | ATP-dependent nuclease | - |
| DQM92_RS01910 (NCTC11940_00354) | - | 401172..402369 (-) | 1198 | Protein_361 | IS256-like element ISLgar5 family transposase | - |
| DQM92_RS01920 (NCTC11940_00356) | - | 402863..403399 (-) | 537 | WP_000551776.1 | hypothetical protein | - |
| DQM92_RS01925 (NCTC11940_00357) | - | 403792..404496 (-) | 705 | WP_000041883.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| DQM92_RS01930 (NCTC11940_00358) | - | 404895..405167 (-) | 273 | WP_000159787.1 | transposase | - |
| DQM92_RS01940 (NCTC11940_00359) | - | 405428..405580 (-) | 153 | WP_000248839.1 | hypothetical protein | - |
| DQM92_RS01945 (NCTC11940_00360) | - | 406104..406463 (-) | 360 | WP_001021622.1 | DUF1304 domain-containing protein | - |
| DQM92_RS01950 (NCTC11940_00361) | - | 406482..407327 (-) | 846 | WP_001024377.1 | SDR family oxidoreductase | - |
| DQM92_RS01955 (NCTC11940_00362) | - | 407799..408479 (+) | 681 | WP_000669005.1 | superantigen-like protein SSL1 | - |
| DQM92_RS01960 (NCTC11940_00363) | - | 408765..409460 (+) | 696 | WP_000782618.1 | superantigen-like protein SSL2 | - |
| DQM92_RS01965 (NCTC11940_00364) | - | 409751..410809 (+) | 1059 | WP_000784024.1 | superantigen-like protein SSL3 | - |
| DQM92_RS01970 | - | 410928..411065 (+) | 138 | WP_001791691.1 | hypothetical protein | - |
| DQM92_RS01975 (NCTC11940_00365) | - | 411174..412100 (+) | 927 | WP_000705644.1 | superantigen-like protein SSL4 | - |
| DQM92_RS01980 (NCTC11940_00366) | - | 412464..413168 (+) | 705 | WP_000784244.1 | superantigen-like protein SSL5 | - |
| DQM92_RS01985 (NCTC11940_00367) | - | 413614..414308 (+) | 695 | Protein_374 | superantigen-like protein SSL6 | - |
| DQM92_RS01990 (NCTC11940_00369) | - | 414729..415424 (+) | 696 | WP_000769836.1 | superantigen-like protein SSL7 | - |
| DQM92_RS01995 (NCTC11940_00370) | - | 415768..416466 (+) | 699 | WP_000673479.1 | superantigen-like protein SSL8 | - |
| DQM92_RS02000 (NCTC11940_00371) | - | 416846..417544 (+) | 699 | WP_000779446.1 | superantigen-like protein SSL9 | - |
| DQM92_RS02005 (NCTC11940_00372) | - | 417910..418593 (+) | 684 | WP_000673051.1 | superantigen-like protein SSL10 | - |
| DQM92_RS02010 | - | 418678..418779 (-) | 102 | WP_010956543.1 | hypothetical protein | - |
| DQM92_RS02015 (NCTC11940_00373) | - | 418857..420413 (+) | 1557 | WP_000028628.1 | type I restriction-modification system subunit M | - |
| DQM92_RS02020 (NCTC11940_00374) | - | 420406..421617 (+) | 1212 | WP_000072584.1 | restriction endonuclease subunit S | - |
| DQM92_RS02025 (NCTC11940_00375) | - | 422000..422677 (+) | 678 | WP_000769163.1 | superantigen-like protein SSL11 | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18571.18 Da Isoelectric Point: 4.7305
>NTDB_id=1137924 DQM92_RS01620 WP_000934798.1 352255..352758(+) (ssbA) [Staphylococcus aureus strain NCTC11940]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVMCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVMCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1137924 DQM92_RS01620 WP_000934798.1 352255..352758(+) (ssbA) [Staphylococcus aureus strain NCTC11940]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTATGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTATGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.386 |
100 |
0.557 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |