Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQM50_RS01910 Genome accession   NZ_LS483347
Coordinates   348427..348918 (+) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus pyogenes strain NCTC8324     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 343427..353918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM50_RS01880 (NCTC8324_00373) - 344616..345116 (+) 501 WP_087671310.1 phosphatase PAP2 family protein -
  DQM50_RS01885 (NCTC8324_00374) trxA 345179..345511 (+) 333 WP_256363924.1 thioredoxin -
  DQM50_RS01890 (NCTC8324_00375) - 345563..346150 (-) 588 WP_011018189.1 helix-turn-helix domain-containing protein -
  DQM50_RS01895 (NCTC8324_00376) mutY 346327..347481 (-) 1155 WP_168393025.1 A/G-specific adenine glycosylase -
  DQM50_RS01900 (NCTC8324_00377) - 347649..347942 (+) 294 WP_002983113.1 hypothetical protein -
  DQM50_RS01905 (NCTC8324_00378) rpsF 348115..348405 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  DQM50_RS01910 (NCTC8324_00379) ssb 348427..348918 (+) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  DQM50_RS01915 (NCTC8324_00380) rpsR 349083..349322 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQM50_RS01920 (NCTC8324_00381) - 349455..350111 (-) 657 WP_002983144.1 DUF1129 domain-containing protein -
  DQM50_RS01925 (NCTC8324_00382) - 350243..351187 (-) 945 WP_002983147.1 magnesium transporter CorA family protein -
  DQM50_RS01930 (NCTC8324_00383) - 351431..352528 (-) 1098 WP_047149517.1 site-specific integrase -
  DQM50_RS01935 (NCTC8324_00384) - 352704..353255 (-) 552 WP_047149516.1 hypothetical protein -
  DQM50_RS01940 (NCTC8324_00385) - 353266..353649 (-) 384 WP_047149515.1 ImmA/IrrE family metallo-endopeptidase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=1137754 DQM50_RS01910 WP_002983122.1 348427..348918(+) (ssb) [Streptococcus pyogenes strain NCTC8324]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1137754 DQM50_RS01910 WP_002983122.1 348427..348918(+) (ssb) [Streptococcus pyogenes strain NCTC8324]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment