Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM73_RS09935 Genome accession   NZ_LS483346
Coordinates   1998520..1999014 (-) Length   164 a.a.
NCBI ID   WP_002896496.1    Uniprot ID   A0A2X3XJA2
Organism   Streptococcus sanguinis strain NCTC11085     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1993520..2004014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS09905 (NCTC11085_01946) - 1994241..1994915 (+) 675 WP_002926653.1 DUF1129 domain-containing protein -
  DQM73_RS09910 (NCTC11085_01947) - 1994933..1995142 (-) 210 WP_002926655.1 DUF1648 domain-containing protein -
  DQM73_RS09915 (NCTC11085_01948) - 1995142..1996752 (-) 1611 WP_050540671.1 hypothetical protein -
  DQM73_RS09920 (NCTC11085_01949) - 1996679..1997392 (-) 714 WP_002926659.1 ABC transporter ATP-binding protein -
  DQM73_RS09925 (NCTC11085_01950) - 1997528..1998190 (-) 663 WP_002918091.1 TetR/AcrR family transcriptional regulator -
  DQM73_RS09930 (NCTC11085_01951) rpsR 1998244..1998483 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQM73_RS09935 (NCTC11085_01952) ssbA 1998520..1999014 (-) 495 WP_002896496.1 single-stranded DNA-binding protein Machinery gene
  DQM73_RS09940 (NCTC11085_01953) rpsF 1999026..1999316 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  DQM73_RS09945 (NCTC11085_01954) hutI 1999495..2000760 (-) 1266 WP_002926663.1 imidazolonepropionase -
  DQM73_RS09950 (NCTC11085_01955) - 2000960..2002990 (+) 2031 WP_002926665.1 urocanate hydratase -
  DQM73_RS09955 (NCTC11085_01956) ftcD 2003106..2004005 (+) 900 WP_002926666.1 glutamate formimidoyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18104.75 Da        Isoelectric Point: 4.7187

>NTDB_id=1137717 DQM73_RS09935 WP_002896496.1 1998520..1999014(-) (ssbA) [Streptococcus sanguinis strain NCTC11085]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRSNREGQSSGGYGGNSFGGSSAPSYGSADSSNQVPNFSRDESPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1137717 DQM73_RS09935 WP_002896496.1 1998520..1999014(-) (ssbA) [Streptococcus sanguinis strain NCTC11085]
ATGATTAATAACGTTGTACTGGTGGGTCGCATGACCCGTGATGCCGAGCTTCGCTATACACCGCAGAACCAAGCGGTCGC
AACATTTACTCTGGCTGTCAATCGTAACTTTAAAAATCAAAGTGGCGAGCGAGAAGCGGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGAGCCCTGATCGGAATTACAGGCCGTATTCAAACGCGT
AACTACGAGAATCAGCAAGGCCAGCGTGTCTATGTCACAGAAGTTGTTGCGGACAATTTCCAACTTTTGGAAAGCCGCTC
TAATCGTGAAGGTCAGTCATCTGGCGGTTACGGTGGGAACAGCTTCGGCGGCAGTTCTGCTCCAAGTTATGGCAGTGCAG
ACTCATCTAACCAAGTACCGAACTTTTCTCGTGATGAGAGCCCATTTGGCAATTCTAACCCAATGGATATCTCAGACGAC
GATCTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3XJA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.634

0.366
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.724

70.732

0.366

Multiple sequence alignment