Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQL21_RS08180 Genome accession   NZ_LS483343
Coordinates   1576859..1577353 (-) Length   164 a.a.
NCBI ID   WP_018030688.1    Uniprot ID   A0A2X3Y150
Organism   Streptococcus ferus strain NCTC12278     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1571859..1582353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL21_RS08160 (NCTC12278_01633) - 1574034..1574978 (+) 945 WP_018030692.1 magnesium transporter CorA family protein -
  DQL21_RS08165 (NCTC12278_01634) - 1575018..1575695 (+) 678 WP_018030691.1 DUF1129 domain-containing protein -
  DQL21_RS08170 (NCTC12278_01635) hdrM 1575778..1576467 (+) 690 WP_018030690.1 LiaF domain-containing protein Regulator
  DQL21_RS08175 (NCTC12278_01636) rpsR 1576520..1576759 (-) 240 WP_018030689.1 30S ribosomal protein S18 -
  DQL21_RS08180 (NCTC12278_01637) ssb 1576859..1577353 (-) 495 WP_018030688.1 single-stranded DNA-binding protein Machinery gene
  DQL21_RS08185 (NCTC12278_01638) rpsF 1577365..1577655 (-) 291 WP_018030687.1 30S ribosomal protein S6 -
  DQL21_RS08190 (NCTC12278_01639) mutY 1578507..1579658 (+) 1152 WP_026161971.1 A/G-specific adenine glycosylase -
  DQL21_RS08195 (NCTC12278_01640) trxA 1579676..1579990 (-) 315 WP_018030685.1 thioredoxin -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18372.04 Da        Isoelectric Point: 4.7187

>NTDB_id=1137613 DQL21_RS08180 WP_018030688.1 1576859..1577353(-) (ssb) [Streptococcus ferus strain NCTC12278]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLVGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRTAREGGQSGNFNSAPSNDFGGNNTYQQSSQSQTPNFGRDESPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1137613 DQL21_RS08180 WP_018030688.1 1576859..1577353(-) (ssb) [Streptococcus ferus strain NCTC12278]
ATGATTAATAATGTCGTACTAGTTGGTCGCATGACTCGAGATGCAGAGCTTCGTTACACCCCAAGTAACCAAGCTGTCGC
AACCTTTACACTCGCAGTCAACCGCAATTTTAAAAATCAAAATGGTGAACGTGAAGCAGACTTCATTAATATTGTTATTT
GGCGCCAGCAGGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGGACCTTGGTTGGTATTACTGGTCGTATTCAGACTAGG
AATTATGAAAATCAGCAAGGTCAGCGTGTTTATGTAACAGAAGTTGTGGCGGATAACTTCCAGATTCTGGAGAGCCGTAC
AGCACGTGAAGGCGGTCAGTCTGGAAACTTCAACAGTGCGCCGTCTAACGATTTTGGCGGGAACAATACCTACCAACAAT
CATCACAATCACAGACGCCTAATTTTGGTCGAGATGAAAGTCCTTTTGGCAATTCAAACCCAATGGACATTTCAGATGAC
GATCTGCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3Y150

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.634

0.366

Multiple sequence alignment