Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DQL56_RS02335 | Genome accession | NZ_LS483342 |
| Coordinates | 405599..406090 (+) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain NCTC11930 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 400599..411090
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL56_RS02310 (NCTC11930_00452) | - | 401371..401871 (+) | 501 | WP_000446812.1 | phosphatase PAP2 family protein | - |
| DQL56_RS02315 (NCTC11930_00453) | trxA | 401934..402266 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| DQL56_RS02320 (NCTC11930_00454) | - | 402312..402905 (-) | 594 | WP_000402394.1 | helix-turn-helix domain-containing protein | - |
| DQL56_RS02325 (NCTC11930_00455) | mutY | 403082..404236 (-) | 1155 | WP_000566235.1 | A/G-specific adenine glycosylase | - |
| DQL56_RS02330 (NCTC11930_00456) | rpsF | 405300..405587 (+) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| DQL56_RS02335 (NCTC11930_00457) | ssbA | 405599..406090 (+) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL56_RS02340 (NCTC11930_00458) | rpsR | 406135..406374 (+) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| DQL56_RS02345 (NCTC11930_00459) | - | 406544..407488 (+) | 945 | WP_000812121.1 | magnesium transporter CorA family protein | - |
| DQL56_RS02350 (NCTC11930_00460) | - | 407513..408184 (+) | 672 | WP_000174846.1 | DUF1129 domain-containing protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=1137519 DQL56_RS02335 WP_000609585.1 405599..406090(+) (ssbA) [Streptococcus agalactiae strain NCTC11930]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1137519 DQL56_RS02335 WP_000609585.1 405599..406090(+) (ssbA) [Streptococcus agalactiae strain NCTC11930]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |