Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQL23_RS03275 Genome accession   NZ_LS483341
Coordinates   684705..685196 (+) Length   163 a.a.
NCBI ID   WP_012130902.1    Uniprot ID   A0AAP2K452
Organism   Streptococcus gordonii strain NCTC7865     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 679705..690196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS03245 (NCTC7865_00648) groES 679838..680119 (+) 282 WP_045504448.1 co-chaperone GroES -
  DQL23_RS03250 (NCTC7865_00649) groL 680142..681764 (+) 1623 WP_060553822.1 chaperonin GroEL -
  DQL23_RS03255 (NCTC7865_00650) - 681901..682659 (+) 759 WP_060553823.1 epoxyqueuosine reductase QueH -
  DQL23_RS03260 (NCTC7865_00651) - 682753..683574 (-) 822 WP_060553824.1 PrsW family intramembrane metalloprotease -
  DQL23_RS03265 (NCTC7865_00652) folE 683622..684185 (-) 564 WP_045634139.1 GTP cyclohydrolase I FolE -
  DQL23_RS03270 (NCTC7865_00653) rpsF 684398..684688 (+) 291 WP_002896497.1 30S ribosomal protein S6 -
  DQL23_RS03275 (NCTC7865_00654) ssb 684705..685196 (+) 492 WP_012130902.1 single-stranded DNA-binding protein Machinery gene
  DQL23_RS03280 (NCTC7865_00655) rpsR 685235..685474 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQL23_RS03285 (NCTC7865_00656) - 685529..686191 (+) 663 WP_081041939.1 TetR/AcrR family transcriptional regulator -
  DQL23_RS03290 (NCTC7865_00657) - 686327..687040 (+) 714 WP_060553826.1 ABC transporter ATP-binding protein -
  DQL23_RS03295 (NCTC7865_00658) - 686967..688577 (+) 1611 WP_060553827.1 hypothetical protein -
  DQL23_RS03300 (NCTC7865_00659) - 688577..688786 (+) 210 WP_045504435.1 DUF1648 domain-containing protein -
  DQL23_RS03305 (NCTC7865_00660) - 689089..689556 (-) 468 WP_045504434.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18152.89 Da        Isoelectric Point: 5.2060

>NTDB_id=1137471 DQL23_RS03275 WP_012130902.1 684705..685196(+) (ssb) [Streptococcus gordonii strain NCTC7865]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAPSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1137471 DQL23_RS03275 WP_012130902.1 684705..685196(+) (ssb) [Streptococcus gordonii strain NCTC7865]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTATACACCGCAAAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGTAATTTTAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTCGGAATTACAGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGATAACTTCCAACTATTGGAAAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGTTATACTCCAAATAACTTTGGCGGTAATGCAGCACCAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment